Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3044g00001 ATGCCTGCTGCAGCTCGTAGAGCTCCTCTGGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCTTTTCGCAGAACCAGGCGTTTTCCATGGCAGCACGATTTATTTGAAGATAGCTTAAAAGCTGCAGGTATACACGGAATAGAAGTGGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTTTTTGCGGAGATTGGAGACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGTCGTCCTAGTGGTTCAGCTGAAGTTGTCTATACAAGAAGGAGCGATGCATTTGCAGCTCTTAAACGGTACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAAGTTGTTGGTGCCAATGCAGAATTGCCTGTATCAGCTCGTGTGAATGTTTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGGTAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGTGCAGGCTGGGGACGTCGTGGTGGTGGAAGGAGCGGTGGTGGGAGTATGCGTGGTCGAGGCGGTGGACGGGGTCGCGGTCGTGGTCGTGGTCGAGGGCGTGGTAAGAAGGATGGGGTTGAGAAGTCTGCTGAGGAACTTGACAAGGAACTGGAGACTTATCATGCGGATGCCATGCACATCTCATGA 711 0.4965 MPAAARRAPLGINSRPSAYAIAKSFRRTRRFPWQHDLFEDSLKAAGIHGIEVGTKLYVSNLDHGVTNEDIRELFAEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAELPVSARVNVSGINGQRKRTVVMTPGGRPGGRAGGPAMFNRGAGWGRRGGGRSGGGSMRGRGGGRGRGRGRGRGRGKKDGVEKSAEELDKELETYHADAMHIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3044g00001 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 124 IPR000504 GO:0003723
Pral3044g00001 236 CDD RRM_THOC4 54 127 - -
Pral3044g00001 236 Gene3D - 50 130 IPR012677 -
Pral3044g00001 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 131 IPR000504 GO:0003723
Pral3044g00001 236 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 22 234 - -
Pral3044g00001 236 Pfam C-terminal duplication domain of Friend of PRMT1 177 230 IPR025715 -
Pral3044g00001 236 SUPERFAMILY RNA-binding domain, RBD 48 128 IPR035979 GO:0003676
Pral3044g00001 236 SMART rrm1_1 55 127 IPR000504 GO:0003723
Pral3044g00001 236 MobiDBLite consensus disorder prediction 157 236 - -
Pral3044g00001 236 Coils Coil 211 231 - -
Pral3044g00001 236 SMART FoP_duplication_2 162 236 IPR025715 -
Pral3044g00001 236 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3044g00001 Pral-Chr3044 11936 26286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3044g00001 19 191 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 2.39e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3044g00001 K12881 - gmx:100801491 320.087