Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3036g00001 TCCCGAAGGAACCGTGCTGCTGAAGTGCACAATCTCTCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCTATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATGATGTTGATGGGAGCTGGCATGACACCAGTGATGATTCCAGGCATTCAGCACTACATGTCTCAAGTGGGTATGGGATTTGCGACACCTTCTGTGTCTAATCATATGAATATACCAAGAGTCCCACTCGATCAATCCATATCTATGTCTCAAGCACCAAATCAGACTGTAACATTCCAAGCTCCTGTTCTGGGTCCCCTTAATTACCAAAATCATATGCAAAATCCAGCTCTTTCTGAGCAATATGCACGCTGCATGGGCTATCATCTTATGCAAAGTGTCTCTCAGCCAACGAATGCATTCAGTTATGGTTCCCAGGCAGTACAACATAGTCAAACCATGATTCCGCCTAGCAATAGCAATGGACCCGTGCGTGGGGCTGCTAATACCAATGATGCTGTCGGTGGCAGGATGGGAATTCCAGTCACCATGTGA 612 0.4526 MNFPGWNFENDAFVTNQKKPMGTDQELVELIWQNGQVVMNSQTQRKPAANSIDSRQFQKNDQSTIRANESYGNSSHLIQDDDAVSWIQYPLEDPLDQQLCSNILSELPSSGLESGKPIRQLEEGKYVKFGPYSACHVTASSQTPNIKPFSQELSGDAMPAPRVHFPDSPQKNIHFGGSQNVLNFSQFSESSKVAPTSSNAQSEGKGNGGLLQNKGKECSVMTVGSSHCGSNQVPLDPDISRASSNGVWTTALFSEPEPQRDGIQKSIHQSEKGKSEVPEPTLSSSSDDSGSLAKTCSWSARSHGQKRKKIDTEELEEQSEDTEPKSAVENKVAQGTRPSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQMMLMGAGMTPVMIPGIQHYMSQVGMGFATPSVSNHMNIPRVPLDQSISMSQAPNQTVTFQAPVLGPLNYQNHMQNPALSEQYARCMGYHLMQSVSQPTNAFSYGSQAVQHSQTMIPPSNSNGPVRGAANTNDAVGGRMGIPVTM 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3036g00001 541 MobiDBLite consensus disorder prediction 188 208 - -
Pral3036g00001 541 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Pral3036g00001 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Pral3036g00001 541 MobiDBLite consensus disorder prediction 42 61 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 261 275 - -
Pral3036g00001 541 SMART finulus 349 398 IPR011598 GO:0046983
Pral3036g00001 541 FunFam Basic helix-loop-helix transcription factor 338 401 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 304 327 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 188 241 - -
Pral3036g00001 541 PANTHER TRANSCRIPTION FACTOR PIF3 15 509 IPR044273 GO:0003700|GO:0006355
Pral3036g00001 541 MobiDBLite consensus disorder prediction 218 241 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 276 300 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 253 349 - -
Pral3036g00001 541 MobiDBLite consensus disorder prediction 513 532 - -
Pral3036g00001 541 CDD bHLH_AtPIF_like 343 406 IPR047265 -
Pral3036g00001 541 Gene3D - 339 400 IPR036638 GO:0046983
Pral3036g00001 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3036g00001 Pral-Chr3036 1591 3589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3036g00001 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 29.870 4.23e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3036g00001 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3036g00001 K16189 - gmx:100784531 635.18