Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3034g00012 ATGAAACGCCCGATCGATGACATCGTTGTGCCCTTGGCTTCTTCGGCTGCCTCCTCCGCCGCTGCGGCTCCTTCGAAACCGGTGTTCTTAACGAAAGCTCAACGTGAACAATTGGCTCTTCAGCGACGCCAAGAAGAAATCGCCGAACAAAGACGCCGTCAGGAACAACTGCTTTCTCGGAACCGCCCATCCGACCCGAACTCTGATTCTAAACCCTCCGATTCCGATCGACGGGACCGGGACCGGGACCGGGACCGGGAACGGGAACGGGACCGCGACCGCGACCGGGACCGGGACCGGGACCGGGATAGAGAGCGGGACCGTGAGCGCGAGCGTGAGCGAGATAGGGCTCGGGATCGGGACCGTGAAACAGAACGCAGGAACCGTGAGAGGGAGCGTGAAGAGGAGGCTAGGGCCCGCGAGCGTGCTCGGACGGAGAAATTGGCAGAGCGGGAGCGTGAGAAAGAGCTTGAAGCGATCAAGGAGCAGTATCTTGGCTCGAAGAAGCCTAAGAAGCGGGTTATCAAACCCAGTGAGAAGTTTCGGTTTTCTTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTTTACCAGAATCCTCACGAAGCGCAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGCTGTTGCACAACGGCGAAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTCAGGGAGGATTTCAATATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGACTGAGAGTAAGTTGAGTCTTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAAACCCCTTCTCCCATTCAGATGGCTGCCATCCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGCGTTGCCGAGACAGGTTCAGGGAAGACCGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACCCGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTTGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAAATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCTCAAGTAATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACTACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACCTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTCGTTAACACTAAGAAAAATGCTGACATGGTTGCAAAGAATTTGGATAGGGATGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACAGGTGTTGCTACGACGTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCCAGACATGAGGCTTCAAAATTCAAGCCAGGAACTATTCCTGATAGACCACCTAGACGGAATGACACCGTATTTGCACATTGA 2193 0.5016 MKRPIDDIVVPLASSAASSAAAAPSKPVFLTKAQREQLALQRRQEEIAEQRRRQEQLLSRNRPSDPNSDSKPSDSDRRDRDRDRDRERERDRDRDRDRDRDRDRERDRERERERDRARDRDRETERRNREREREEEARARERARTEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWTESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDRDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3034g00012 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 536 IPR014001 -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 41 173 - -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 41 59 - -
Pral3034g00012 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 707 IPR001650 -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 705 730 - -
Pral3034g00012 730 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 465 473 IPR000629 -
Pral3034g00012 730 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 242 707 - -
Pral3034g00012 730 SMART helicmild6 587 668 IPR001650 -
Pral3034g00012 730 SMART ultradead3 329 551 IPR014001 -
Pral3034g00012 730 FunFam probable ATP-dependent RNA helicase DDX23 271 540 - -
Pral3034g00012 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 689 IPR027417 -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 698 730 - -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 67 169 - -
Pral3034g00012 730 Gene3D - 541 728 IPR027417 -
Pral3034g00012 730 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724
Pral3034g00012 730 CDD SF2_C_DEAD 548 677 - -
Pral3034g00012 730 CDD DEADc_DDX23 321 537 - -
Pral3034g00012 730 Pfam DEAD/DEAH box helicase 335 525 IPR011545 GO:0003676|GO:0005524
Pral3034g00012 730 Coils Coil 222 248 - -
Pral3034g00012 730 Coils Coil 30 60 - -
Pral3034g00012 730 Coils Coil 114 151 - -
Pral3034g00012 730 MobiDBLite consensus disorder prediction 227 253 - -
Pral3034g00012 730 Pfam Helicase conserved C-terminal domain 563 668 IPR001650 -
Pral3034g00012 730 FunFam probable ATP-dependent RNA helicase DDX23 541 729 - -
Pral3034g00012 730 Gene3D - 271 540 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3034g00012 Pral-Chr3034 46198 50710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3034g00012 308 690 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 9.38e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3034g00012 K12858 - gmx:100792810 1120.53