Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3029g00012 ATGGGTCGCCATTCCTGTTGTGCGAAGCAAAAGTTGAGGAAAGGCTTATGGTCCCCTGAAGAAGACGAGAAGCTTTTCAACCACATAACTAGATTTGGGGTTGGCTGCTGGAGCTCCGTCCCAAAACTAGCTGGACTTCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTATCTGAGGCCTGATTTGAAGAGAGGCATGTTCTCGCAACAAGAGGAGGATATTATTCTGAGTCTCCATGAAGTTCTGGGCAACAGGTGGGCTCAGATTGCAGCGCAGTTGCCAGGAAGAACAGATAACGAAATCAAGAACTTCTGGAATTCATGCTTGAAGAAGAAGCTGCTGAAACAAGGGATTGACCCAGCCACCCACAAACCCTTCACTCAAATCAAGCAGGAGAACAATAGCTTAGAAACACCAGCACCATTATCTCTGCAAAATATGCGTCATTTCTCAAACTTAGCCTCCTCACATCAGTCACAGGGATCACCTTTTCTGATAAGCAATTCAAGCTATCACGATGCAGCTGTTTTAACAGAAGCCTCCTGCAGAGACGAAATCCTGATGAGCATGAGCAATAAGCCTCTTGAATGGGTCGACCCTTTGTCGTACTACGACCCATACACGAGTCAGTATCAGTATGGAACCAGTTCAAGCTACGGGATCTGTTCATTGCCGAGTTTGACAAGTTCGGATCAGAACAACTTGTCGGCGATAACGGAATTCTCAGAAAACAATAATTCGGCTTCAAAGATCAGTTCGAGCAATAACAGCTCAAATATGAGCAGTTATGTGATGGAGCATAATAATATTGGAGGAGGGGTGTTATCGTGGGAGGGAGAGAACAAGACGACGGAGGCTTCGTTTCAGTTTCAAATGAATGGTATAAAATCGGAGGAACTGATGAACACATGCTCGTGGCAAGAAGCGGTGCAGCTTCAGAATCACAGTTCCATGGATTTCAACAGCTATCCGTTAACGTCATTCTCACAAGATCTAACGGCAGCGACTTATGATGTATTCCGGCATATATGA 1041 0.4486 MGRHSCCAKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDIILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPATHKPFTQIKQENNSLETPAPLSLQNMRHFSNLASSHQSQGSPFLISNSSYHDAAVLTEASCRDEILMSMSNKPLEWVDPLSYYDPYTSQYQYGTSSSYGICSLPSLTSSDQNNLSAITEFSENNNSASKISSSNNSSNMSSYVMEHNNIGGGVLSWEGENKTTEASFQFQMNGIKSEELMNTCSWQEAVQLQNHSSMDFNSYPLTSFSQDLTAATYDVFRHI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3029g00012 346 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Pral3029g00012 346 Gene3D - 11 67 - -
Pral3029g00012 346 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral3029g00012 346 CDD SANT 70 109 IPR001005 -
Pral3029g00012 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral3029g00012 346 Gene3D - 69 141 - -
Pral3029g00012 346 CDD SANT 17 61 IPR001005 -
Pral3029g00012 346 FunFam Transcription factor MYB86 69 137 - -
Pral3029g00012 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral3029g00012 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral3029g00012 346 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral3029g00012 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral3029g00012 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral3029g00012 346 SMART sant 66 114 IPR001005 -
Pral3029g00012 346 SMART sant 13 63 IPR001005 -
Pral3029g00012 346 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3029g00012 Pral-Chr3029 63314 64991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3029g00012 1 191 MYB Transcription Factor Family AT1G57560 62.827 2.06e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3029g00012 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3029g00012 K09422 - tcc:18603988 382.104