Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3026g00003 ATGGCTGCCCTAGATCAGTATTTTGAGGAGGCTTTGCCCCACACCGATTCCTTTGGTGAAGATAACTCTTATTCAGAAAAATGGGAATCTGGTACAGATTCCATTGCAGACTCTGATGGAAATGACTCTAATGGCTTTGATTGCAATATCTGCTTTGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCATGCATTTACAAATGGCTTCATTTTCACAATCTCTCCAACCAAGAAAATGGCGAAGAACAGAGTCCACAGTGTCCGGTATGCAAAACAGAAGTTTCCCAATCCTCGCTGGTTCCACTCTATGGCAGAGGCCAGACCACAAAACCTTCCAAAGGCAAGTCCCACCATGTGGGGAGTATGATCCCACAAAGACCACATGGACCTTTGTCTCTGGTTGATCCTCGAAGACCATTTAATGCTAGTACTAGTGCAGTTCCACAACCGTCTTCCCAATTCTATCATGGTCATTATCCTTATTATCATCCTCAACAGTTCAACTCAATTTCAAGCAGTTCCAACTCAGGAATGCTTGGCATGGATGGCGCACTAAGAAACGCATTTGATTCAAGAATTGGTGTGTTTGGTGAGATGGTATATGCGAGAGTGTTTGGGAACCAGGTGACAAACGTATACGCTTACCCTGATACATATAATCTGGCAGTGAACAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGCAACTGAATAGAATCTGCTTTTTCCTGCTTTGTTCTTTAGTTTTGTGTCTTCTCTTATTCTGA 798 0.4336 MAALDQYFEEALPHTDSFGEDNSYSEKWESGTDSIADSDGNDSNGFDCNICFDCVQDPVVTLCGHLYCWPCIYKWLHFHNLSNQENGEEQSPQCPVCKTEVSQSSLVPLYGRGQTTKPSKGKSHHVGSMIPQRPHGPLSLVDPRRPFNASTSAVPQPSSQFYHGHYPYYHPQQFNSISSSSNSGMLGMDGALRNAFDSRIGVFGEMVYARVFGNQVTNVYAYPDTYNLAVNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3026g00003 265 SMART ring_2 48 97 IPR001841 -
Pral3026g00003 265 SUPERFAMILY RING/U-box 42 104 - -
Pral3026g00003 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 129 IPR013083 -
Pral3026g00003 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 262 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral3026g00003 265 MobiDBLite consensus disorder prediction 114 139 - -
Pral3026g00003 265 MobiDBLite consensus disorder prediction 14 36 - -
Pral3026g00003 265 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Pral3026g00003 265 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 31 111 - -
Pral3026g00003 265 ProSiteProfiles Zinc finger RING-type profile. 48 98 IPR001841 -
Pral3026g00003 265 Pfam Zinc finger, C3HC4 type (RING finger) 48 80 - -
Pral3026g00003 265 CDD RING-HC_AtRMA-like 46 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3026g00003 Pral-Chr3026 18411 21587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3026g00003 26 265 C3H Transcription Factor Family AT4G28270 38.525 3.10e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3026g00003 K10666 - gmx:100785491 305.449