Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3022g00005 ATGGATGATTACGATTTGTTTCCCTTGTGCCACCTGAACTCTATCGATGACGATCTGTTTATTTCACAACATGACATAGCCAGTGTTGTGCAGGCGCAGTACTTGCAGCCATCTTTGTCTTGTGAGAGCTATTCTTCGTATAATTCATGCACTACTGCTGAAACTAGCCTCGAGGGGCCTCTTTTGCAGTTCAAATCCAATAATAGTTGGAATTATTCCGCCATATCTGATCCTTCATCTTCTTCTCAACTTCTGTCTTTTGATAACTCTAATAATAACACTTCGTCGCATACCAACAGCACCAGCCTTTCTCATGGTTTTGACCCAACCACGACATTGAAGCCAAACAAGGAGCTAGAGGTTCCGTCACATCATATACATTATTTCTCAGCTCAATCTCCTAATGGGTTTTTCCAAAATCATAACTTTGAGGCCAAATCCACCCAAAGCATCAATAATAGGCCCATCCCTCACGTCCGTGATCACATCATGGCTGAGAGAAAACGCAGAGAAAAACTCAGCCAGAGCTTCATTGCTCTTTCAGCCCTTGTCCCTGGCCTCAAAAAGATGGACAAGGCTTCGGTGCTTGGGGATGCTATCAAGTACGTGAAGGAGCTGAAGGAGCGACTGAGGTTGCTGGAAGAAGAGAACAAGAAAAGAAGAGTTGAATCAGTGGTTAAAGCGAAGAAATCGCAACTGTTCGAGGATGACGATGATGAAGAAGGACTTGCTGAAGTGGAAGCAAGAGTGTTGGAGAAGGAGGTACTGGTTCGGATCCACTGCCAGAAACACAAGGGACTTTTGGTGAAAATACTAGCAGAGATTCAGAATCTGCAACTTTATGTTGTCAATAGCAGCGTCTTGCCATTCGGGGACTCCAATCTTGACGTCACCATTATTGCTCAGATGGGCGAAGATTGCAGCTTGACGATGAGGGAACTCGTAAAGAACCTACGAGTGGCTATTTTAAGTGAGTCGCACTCGGATGATGCAGCCAGATACAATAAAAAACTGAGACTTCATTAA 1026 0.4425 MDDYDLFPLCHLNSIDDDLFISQHDIASVVQAQYLQPSLSCESYSSYNSCTTAETSLEGPLLQFKSNNSWNYSAISDPSSSSQLLSFDNSNNNTSSHTNSTSLSHGFDPTTTLKPNKELEVPSHHIHYFSAQSPNGFFQNHNFEAKSTQSINNRPIPHVRDHIMAERKRREKLSQSFIALSALVPGLKKMDKASVLGDAIKYVKELKERLRLLEEENKKRRVESVVKAKKSQLFEDDDDEEGLAEVEARVLEKEVLVRIHCQKHKGLLVKILAEIQNLQLYVVNSSVLPFGDSNLDVTIIAQMGEDCSLTMRELVKNLRVAILSESHSDDAARYNKKLRLH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3022g00005 341 Gene3D - 158 223 IPR036638 GO:0046983
Pral3022g00005 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Pral3022g00005 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 223 IPR036638 GO:0046983
Pral3022g00005 341 CDD bHLH_AtNAI1_like 158 231 - -
Pral3022g00005 341 MobiDBLite consensus disorder prediction 83 113 - -
Pral3022g00005 341 Coils Coil 196 223 - -
Pral3022g00005 341 SMART finulus 163 212 IPR011598 GO:0046983
Pral3022g00005 341 PANTHER BHLH TRANSCRIPTION FACTOR 31 324 - -
Pral3022g00005 341 MobiDBLite consensus disorder prediction 83 111 - -
Pral3022g00005 341 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3022g00005 Pral-Chr3022 31732 33383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3022g00005 11 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.393 1.25e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3022g00005 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3022g00005 - - pcin:129310279 349.362