Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3022g00003 ATGGAATCGATGGAGGAATCCTGGGAAAGCTTGTTCCAGGATTTGGCAATAGCTGGTGATTTCAGTTTTGCTTTTGGGGCTCATGAATTGTTAGGCAGTGCATCACATGAGAACTTTGGAACTAGTTGGAATAATAATAATAATAATACAGATACCTTCAACTCCGAAAATGGCATCATCACGAGCAATCCTTCAAGTTCAAATTCTGTCTTCATGCTACAAGACAAGGCTTCTTTTGATGACCCTTCAAAGGGGTACTTGCAGATTCAAACAAGAATTAAAGAAAGAGGCATGGCGGAGGGTAGAAACACTCGAGAACAAGATCACTTACTTGCCGAGAGAATAAGGAGAGGAAAGATCACCCAGCACTTCATTGCTCTTTCAGCCCTAATTCCTGGCCTCAAAAGGGCGGATAAGGCTTCTGTGCTGGAGGGAGCTATAAAGCACGTGAAGCAGCTTCAAGAACAAGTGAAAATATTGGAAGAACAGACGAAGAAGAAAACTGGAGAATCCTTGGTGTTTGTTAAGAAGTCTCAGCTGATATCTACGGACATGTCGTTTAATAATTCATCAGACAATATCAAAAACTTCCTTGATCCCTCAGAATCTCATAGAACAGTAGCAGAAGCAGATGTTGAAGCAAGGGTTTCAGACAAGAACGTGTTAATTCGGGTCCAATGCGAGAAACAAGAAGGAATAATGGTGAAGACAATTAAGGAGATAGAAAAATTCCACTTGTCTGTGGTAAATAGCAGCGTGATGCCATTTGGGACTTCCATTCTGGACATCACCATCATAGCTGAGATGGAGGATGAGTTCAACTTGGGCGGGAAAGAGCTCGCTAGAAATCTCAGGATGGCACTCTCACAATCAATGTAA 879 0.4198 MESMEESWESLFQDLAIAGDFSFAFGAHELLGSASHENFGTSWNNNNNNTDTFNSENGIITSNPSSSNSVFMLQDKASFDDPSKGYLQIQTRIKERGMAEGRNTREQDHLLAERIRRGKITQHFIALSALIPGLKRADKASVLEGAIKHVKQLQEQVKILEEQTKKKTGESLVFVKKSQLISTDMSFNNSSDNIKNFLDPSESHRTVAEADVEARVSDKNVLIRVQCEKQEGIMVKTIKEIEKFHLSVVNSSVMPFGTSILDITIIAEMEDEFNLGGKELARNLRMALSQSM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3022g00003 292 PANTHER BHLH TRANSCRIPTION FACTOR 38 290 - -
Pral3022g00003 292 Gene3D - 101 172 IPR036638 GO:0046983
Pral3022g00003 292 Pfam Helix-loop-helix DNA-binding domain 107 154 IPR011598 GO:0046983
Pral3022g00003 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 166 IPR036638 GO:0046983
Pral3022g00003 292 SMART finulus 110 159 IPR011598 GO:0046983
Pral3022g00003 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Pral3022g00003 292 Coils Coil 143 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3022g00003 Pral-Chr3022 27956 29697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3022g00003 63 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.783 1.29e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3022g00003 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3022g00003 - - pcin:129310385 357.451