Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3020g00003 ATGGGCTCTGAAGCGACCCTTATCCCACAATGGGCATCCCAGCCTTGTATCATGGGAATCGATGAAGCTGGCCGAGGACCCGTTTTAGGACCCATGGTGTATGGATGCTTGTACTGTGCTCGCTCCTATCAGAAGACCCTCGCAACTTTGAGTTTTGCTGATTCGAAGACGCTAAAAGAAGAGAAGAGGGAAGAATTATTTGATAATCTAAAGGGAAATGAATCGATTGGATGGGCAGTTGATGTCTTAGACCCAAGGGAACTCTCAGCTAAAATGTTGAAGAGGAACAAGATAAACCTGAATGAGATATCGCATCAATCTGCAATGGGCTTGATTGATAGGGTACTGAAGATGGGAGTTCTTCTGACTGAGGTCTATATAGATACCGTTGGAGATCCAGGAAAATATGAAATTATGCTATCAAAAAATTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTGAGTGGTGCTAGCATAGTCGCTAAGGTCACAAGAGACCGAGCTTTGCGTGAATGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGGTCCGGATATCCTGGAGACCCCCAAACCAAATCCTGGTTAGAACATCACAAACATTCTGTCTTTGGATTCCCAACCTTGGTCAGATTCAGCTGGGGAACCTGCACTACATATTTTAAAGATATTGTGGAAGTCTCATGGGAATCTGATAAAATGGAAGAAGAAGGGGAAGGCGGTAGCAACAGTGGCAAGCGGCAATTGAAATTAAGAAATGTAGGTTTCACCACAACCAAGAGAAAAAGTGAAGAAATAGAATCAAGTGGCAAAGGTCGCAGTAGGTTTTTCCAGACTCGGAAACTTGAGATTGTTACTGATTTCTGA 900 0.4322 MGSEATLIPQWASQPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREELFDNLKGNESIGWAVDVLDPRELSAKMLKRNKINLNEISHQSAMGLIDRVLKMGVLLTEVYIDTVGDPGKYEIMLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMHRNFGSGYPGDPQTKSWLEHHKHSVFGFPTLVRFSWGTCTTYFKDIVEVSWESDKMEEEGEGGSNSGKRQLKLRNVGFTTTKRKSEEIESSGKGRSRFFQTRKLEIVTDF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3020g00003 299 Gene3D - 3 187 IPR036397 GO:0003676
Pral3020g00003 299 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 15 237 IPR024567 GO:0004523
Pral3020g00003 299 MobiDBLite consensus disorder prediction 268 283 - -
Pral3020g00003 299 MobiDBLite consensus disorder prediction 246 283 - -
Pral3020g00003 299 NCBIfam ribonuclease HII 17 230 IPR004649 GO:0004523|GO:0016070
Pral3020g00003 299 FunFam Ribonuclease 2 187 - -
Pral3020g00003 299 Pfam Ribonuclease HII 18 228 IPR024567 GO:0004523
Pral3020g00003 299 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 286 IPR001352 GO:0003723|GO:0004523
Pral3020g00003 299 CDD RNase_HII_eukaryota_like 18 234 - -
Pral3020g00003 299 SUPERFAMILY Ribonuclease H-like 16 233 IPR012337 -
Pral3020g00003 299 Gene3D Ribonuclease hii. Domain 2 188 237 IPR023160 GO:0004523
Pral3020g00003 299 FunFam Ribonuclease 189 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3020g00003 Pral-Chr3020 11096 15315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3020g00003 1 299 Core DNA Replication Machinery Family AT2G25100 67.224 1.99e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3020g00003 K10743 - qsa:O6P43_004883 507.294