Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3013g00002 ATGATGGACGCTGCCGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAAGCTCTTTCTATACTGTATTGCAAAGTATTGTCAATATTTCCATCTTTAGAAGCAGCTAGGCCTAGGAGCAAAGCTGGTATTGAGGCTTTATGTTCATTACACGTAGCCCTAGAGAAGGCCAAGAATCTTCTTCAGCACTGTTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGCCGTTCTTCTAAAATTTGAAAAGTCTAAATCTGCTATTAAAGATGGCCTTATGCAGGTGGAAGATATTGTTCCGCGTTCTATGGCATGTCAGTGTCAGGGGATTGTGAATGAACTTGAGGGTGTAAAATTTGCACTTGACCCATTGGAGAAGCAAGTTGGTGCTGATTTAATTGAACTGCTACATCAAGGGAGACAATGTAGCGACTCTAATGACGCCAGCGAGCTTGAGTGTTTTCACCAGTGCGCTATTAGACTTGGGATCACATCTTCGAGAGAAGCTCTTACAGAAAGAAGAGCTCTCAAGAAGCTCATTGAAAGAGCCAGGGCTGAGGAAGACAATCAGAAGGAATCAATAGTTGCATATCTTCTACACCTCATGAGGAAATATTCCAAGTTATTTAAAAATGAAATTTCTGATGACAATGATTCACAAGGTTCCGCTCCTTGTTCTCCCAGTACTCAGGGATCTGTTGAGTGCAGTGTTCCTAATAGTCAATGTCAGGCCCTTGAAAGAGAGATTTCAAAACGCTGTTCCATTAATTTAAATCCAATCAATAGGAGATCAGGTCAGATGCCTCTTCCACCTGAAGAGTTGAGGTGTCCAATATCTTTGCAACTTATGTGTGATCCCGTCATCATCGTTTCCGGTCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGACACGATACTTGCCCCAAGACACAACAGAAACTCGATCATCTTTTGTTGATTCCGAATTACTGTGTTAAGGGTCTCGTTGTTAACTGGTGTGAACAGAATGGAGTCCCTGTTCCTGGTCGACCTCCTGAATCTTTTGATATTAACTACTCGACCTTGGCTTTATCAGAGCCTGAATCAACAAATTCAAAAGCTGTAAATAGTTTGAGTTCATGCAAGTCGAATGGTGTCAAAGTGGTTCCTTTAGAAGAGAGCGGCCTCTCAGAAGAAGCCGGAGTAGATAAAAACGAAGCTTTGTCTGCACCGGAGGAAGATACCGAGCAGTATCTGAGGTTGCAGAAAGTTTTGCTTGAAAAGACAGATTACAAGACAAAGTGCAATGTGGTCGAACAGTTAAGGATATTACTGAGGGATAAGGAGGAAGCCAGGAATTATATGGGAGCTCATGGATTTGTTGAGGCACTTTTGCAGTTTCTAAAGTCAGCTCTGTCTGAAGGGAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGTTATCGGCAGGAGTGTTACCATTGCTGGAGGAAATTTCTAACTCAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTGGAAGAAGCCAAGACCAAGATAGGGAAGACTCAGGCTGTCCAGTTCCTGATCCGTCTCCTTCAAGATGACACCGAAATTCAATGCAAACAAGATTCTCTCCACTCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTTTCATCTGGGATCATCAATGGCCTTCTGTCCCTTCTTTCAGGCCAGGGTGATGATAATAGCATGTGGACAGAGAAATGCATTCCTGTTCTCATAAATTTGGCTGCTTCTAATTTGGGAAAAGAGGAAATAATCTCAACCCCAGGACTCATTAATGCAGTGGCTAAGAAACTAGAATCTAGTGAGCTCTTAGAGCAAGAACAAGCTGTGTCTTGTCTTTTAATCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTAAGAGAAGGTATAATACCTTCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGGGAAAGAAAAAGCTCAGAAACTTTTGATGCTCTTTAGAGAGCAGCGACGAGATCCTTCACCTGTTAAGATACGTTTGTGTCCTCCTGCTCCTGAACCTGATAATAAGAGGAATTTGGTTGTTTCTCAGCAAGAAACAAAACCTCTGATTAGCAAGTCATTGTCTAGAAGAATAATTGAGAAGCCTTTTAGATTTTTCTCCAAAAGCAAGAGTTATTCTATTTATCACAATTAA 2316 0.4154 MMDAAEVEENLFAASDAKLHGEMCKALSILYCKVLSIFPSLEAARPRSKAGIEALCSLHVALEKAKNLLQHCSECSKLYLAITADAVLLKFEKSKSAIKDGLMQVEDIVPRSMACQCQGIVNELEGVKFALDPLEKQVGADLIELLHQGRQCSDSNDASELECFHQCAIRLGITSSREALTERRALKKLIERARAEEDNQKESIVAYLLHLMRKYSKLFKNEISDDNDSQGSAPCSPSTQGSVECSVPNSQCQALEREISKRCSINLNPINRRSGQMPLPPEELRCPISLQLMCDPVIIVSGQTYERVCIEKWFRDGHDTCPKTQQKLDHLLLIPNYCVKGLVVNWCEQNGVPVPGRPPESFDINYSTLALSEPESTNSKAVNSLSSCKSNGVKVVPLEESGLSEEAGVDKNEALSAPEEDTEQYLRLQKVLLEKTDYKTKCNVVEQLRILLRDKEEARNYMGAHGFVEALLQFLKSALSEGNLKAQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISNSSSYGCATALYLNLSCLEEAKTKIGKTQAVQFLIRLLQDDTEIQCKQDSLHSLYNLSTVPSNIPNLLSSGIINGLLSLLSGQGDDNSMWTEKCIPVLINLAASNLGKEEIISTPGLINAVAKKLESSELLEQEQAVSCLLILCNGNEKCSHKVLREGIIPSLVLISVNGTPRGKEKAQKLLMLFREQRRDPSPVKIRLCPPAPEPDNKRNLVVSQQETKPLISKSLSRRIIEKPFRFFSKSKSYSIYHN 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3013g00002 771 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Pral3013g00002 771 SMART arm_5 539 580 IPR000225 GO:0005515
Pral3013g00002 771 SMART arm_5 455 499 IPR000225 GO:0005515
Pral3013g00002 771 Gene3D - 532 706 IPR011989 -
Pral3013g00002 771 PANTHER U BOX DOMAIN-CONTAINING 24 710 - -
Pral3013g00002 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Pral3013g00002 771 Gene3D - 425 531 IPR011989 -
Pral3013g00002 771 SUPERFAMILY ARM repeat 418 706 IPR016024 -
Pral3013g00002 771 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pral3013g00002 771 Coils Coil 176 203 - -
Pral3013g00002 771 SUPERFAMILY RING/U-box 278 357 - -
Pral3013g00002 771 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Pral3013g00002 771 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pral3013g00002 771 CDD RING-Ubox_PUB 281 333 IPR045210 -
Pral3013g00002 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3013g00002 Pral-Chr3013 32473 36215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3013g00002 2 770 U-box Gene Family AT1G24330 61.392 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3013g00002 - - gmx:100814944 1067.37