Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3012g00006 ATGGCTCCTTCTTCTTCTTCTTCTTTCGATGATTCTCAGATCAAATACGATGTGTTCATCAGCTTCAATGGCAAGGACACGAGACGTGGTTTTCGGAGTCATCTGGTAAAGGAACTACGTCGGGAGAACATCGGAGTATATGAAGATGAGAAAATGAACAGAGGAGAGGAAATATCATCCTCGCTTCGAACAGCAATTAAAGAATCGCAAATTTCAATCGTCGTTTTCTCAAAAAACTATGCCTCTTCAAGGTGGTGCTTGGATGAGCTTGAAGAAATAATGGAGTGCAGGAAAGTGAACAAACAAATTGTTTTACCCGTTTTCTACAACATAGATCCCTCACATGTGCGGCATCAGAGAGGCACTTATGAAAATGCATTTGCTCGACATGAATTGAGCTTTCAGGGAAACAGCTTGAAGGTTCAGAATTGGAGATCAGCCTTGAAGAATGCTGCTGACCTATTTGGCTATGATTCGTCCCGTTACGGTACTGACTTTGAGCTCATAGGTGAAATCGTCAAAGATGTTTTGTTAAGAGTGAATGATATCTATCCTAGTGAGTCAAATGGCCTTGTTGGAATTGATCAACACCTTGATCGTATCAGATCATTTTTGGAAATGGAGTCAAAAGAAGTTCAAATCCTCGGAATTTGTGGTATGGGTGGCATTGGTAAAACAACCATTGCACAACTTGCATTTGACAAATTCTCTTCCCGCTATGAAGGCTCTTACTTTTTAGACAATGTGAGAGAAGAATCACAAAAGCATGGGCTGAAATATTTAGGAGAGAAACTTATTTCTGAACTGCAAGAGGAAAAATCCACTTTCATCCGTAGAAGGCTTATTGGACAAAGAAAAGTTTTAGTTGTGCTTGATGATGTGGATACTCCAGCGCAACTACAGCATCTAGTTACAGAAGGATTTCATTGGGGACCTGGTAGTAGAGTTATTGTAACAAGCCGAAACAAGCAAACGCTAATTGATGGAGGAGTTCATGCCATACATGAGATCGAGAAATTGGACTTTGAAGAATCCCTTCATCTTTTCAGCTTAATTGCCTTCAAAAATAGCCATCCCAAAAAGGGATATGAAGAACTTTCAAAACAGGCAGCTGCTTATGCCAATGGCCTTCCTCTAGCTCTGAAAGTCTTGGGTTCGCATCTTTATTCTTGTGATAGAGAAACATGGAAAAGTACATTGAGAAAACTTGAGATGTATACCCATCCTCAAATTCAAGATGTGCTGAAAATGAGTTTTGAAGGATTAGATGATGTAGAAAGGGACGTATTTCTTGACATCGCTTTCTTTTTCAAAGGAGAAGATAAAGATTATGTCAAGAGGCTACTTGATGTCAATAACCCTTTTGCTGCTCATGGAATAAAAGGACTTCTAGATAAAGCTCTTATATCCATTTCAAATGACAATGGAATTGATGCCATTAAAGGCATAGTGTTACATGCTTCTCTCTTTAAAGATGTACGGTTGAATGTTGACGCCTTCAAAAATATGACTAATCTCAGAGTCATCAAGTTTTACCCTTCCTGGCATGTGAGATCTTGTAATGTGCACCCTCCAAGTTTTTTGTCGTTCTCGGATGAGCTAAGGTGCCTAGGGTGGCATGGATACCCATACCCATATCCTGAGAAACTTGATGGGCATTCTATGCCCAACAACCACGTTGGGAAACTTTGGAAACTAGTGCAGGGTTATGTGAATTCTAAGAGAATGAGCCTTGGTAGCTCAAAACAATCAACGGAGTTGCTTGATCTCACGAAGGCACAGAAAACTGAATGGGAGGATATGCGTTCTTGTCAAGTGTCAGGGTATTTTTTGTCATCAAAGGAAATATCAGAGTCGGATTTAGTAACTTCAAAATTCGAAATACTGTGCTCATCATCAGTTCGGGGTCTCAGTGAGCTAAGAAGGATCACACATGGTGACTCAGGACTAGAGATTCTTCCCGTAAATGAGTTGTGTTGCCTGAGATATTTTGAAGATCCTAGTCTTTCTGATTGTAGACAAATGAATCAAGCTGCGCATCCTATTTGGCGCCTTACTTTATTTAAGAGAACTATTTATGACTGGCTGAAGTGTCTTTTGGTGCTCATCCCTTTGATGAGCACCCTAAGCTCATCAGATTTGGATCATCCATATCTCATGAAATCTGGACCAAAACGAGATATGGATAATCCAGATTTGATAAGTTTAGGATGCTTATCAAGGTGA 2226 0.3998 MAPSSSSSFDDSQIKYDVFISFNGKDTRRGFRSHLVKELRRENIGVYEDEKMNRGEEISSSLRTAIKESQISIVVFSKNYASSRWCLDELEEIMECRKVNKQIVLPVFYNIDPSHVRHQRGTYENAFARHELSFQGNSLKVQNWRSALKNAADLFGYDSSRYGTDFELIGEIVKDVLLRVNDIYPSESNGLVGIDQHLDRIRSFLEMESKEVQILGICGMGGIGKTTIAQLAFDKFSSRYEGSYFLDNVREESQKHGLKYLGEKLISELQEEKSTFIRRRLIGQRKVLVVLDDVDTPAQLQHLVTEGFHWGPGSRVIVTSRNKQTLIDGGVHAIHEIEKLDFEESLHLFSLIAFKNSHPKKGYEELSKQAAAYANGLPLALKVLGSHLYSCDRETWKSTLRKLEMYTHPQIQDVLKMSFEGLDDVERDVFLDIAFFFKGEDKDYVKRLLDVNNPFAAHGIKGLLDKALISISNDNGIDAIKGIVLHASLFKDVRLNVDAFKNMTNLRVIKFYPSWHVRSCNVHPPSFLSFSDELRCLGWHGYPYPYPEKLDGHSMPNNHVGKLWKLVQGYVNSKRMSLGSSKQSTELLDLTKAQKTEWEDMRSCQVSGYFLSSKEISESDLVTSKFEILCSSSVRGLSELRRITHGDSGLEILPVNELCCLRYFEDPSLSDCRQMNQAAHPIWRLTLFKRTIYDWLKCLLVLIPLMSTLSSSDLDHPYLMKSGPKRDMDNPDLISLGCLSR 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3012g00006 741 Pfam NB-ARC domain 195 404 IPR002182 GO:0043531
Pral3012g00006 741 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Pral3012g00006 741 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Pral3012g00006 741 Gene3D - 339 423 IPR042197 -
Pral3012g00006 741 SMART till_3 15 154 IPR000157 GO:0007165
Pral3012g00006 741 Gene3D - 181 329 IPR027417 -
Pral3012g00006 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 433 IPR027417 -
Pral3012g00006 741 PRINTS Disease resistance protein signature 281 295 - -
Pral3012g00006 741 PRINTS Disease resistance protein signature 374 388 - -
Pral3012g00006 741 PRINTS Disease resistance protein signature 580 596 - -
Pral3012g00006 741 PRINTS Disease resistance protein signature 214 229 - -
Pral3012g00006 741 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Pral3012g00006 741 Pfam TIR domain 15 190 IPR000157 GO:0007165
Pral3012g00006 741 SUPERFAMILY "Winged helix" DNA-binding domain 410 482 IPR036390 -
Pral3012g00006 741 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 678 IPR044974 GO:0006952
Pral3012g00006 741 Gene3D - 13 180 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3012g00006 Pral-Chr3012 75816 78852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3012g00006 3 604 WRKY Transcription Factor Family AT4G12020 30.312 6.66e-63 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3012g00006 - - ahf:112728432 538.88