Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3012g00003 ATGGAACAGTCGAAATTGTCTGCTGAATCTCCTTACAAGGAGATATCAGCCAGATGGGATCCAGATGAAGCATGCTTGCCTGTAATTGATGAAGCACCTGTCTTTCATCCAACTGCTGAGGAGTTTGAGGACACCCTTGGTTACATAGCAAAGATACGCCCCCTGGCTGAACCACATGGCATATGTCGGATAGTCCCTCCACCTTGCTGGACTCCATCTTGCCCTCTTAAGGAGAAAGACATTTGGGAAAATGCTAAATTTCCCACCCGTATTCAGCAGATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAAGCAGGGGAAGGAAACGAAAACGTAGAAAGAACACAAAAATGGCAATGTGCAGGAGACTTGCCAATCCAGATTCAGAAGTTAATGCTGCTTCTGAATCTGATGAAAAATTTGGATTCCAATCAGGACCAGACTTCACACTCAGAGACTTTCAACGATATGCTGCTTTTTTTAAAGAATGCTACTTTGGGAAGAAGGATATCAAAGAGGATGGACAAATTAGTGATAATCAATATCAGAAAAGGTGGGAGCCCTCTGTGAAGGAAATTGAAGGTGAATACTGGAGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTACTACGGGGCTGACCTGGAAAGTGGAGCACTTGGAAGTGGTTTTCCAAAGGCTGATTCTCTAACTAAGAGCGACTTGGATGAGTATACACTATCTGGCTGGAATCTGAATAACATCCCACGGCTGCCAGGTTCGGTGCTATGTTTTGAAGGAAGTGATATCTCTGGAGTTCTGGTGCCTTGGCTATATGTTGGGATGTGTTTTTCATCATTTTGCTGGCATGTCGAGGATCATCACCTTTATTCGCTAAATTATTTGCACTGGGGCGATCCAAAAGTATGGTATGGAGTACCTGGCAATCATGCTACGTCTTTGGAGGGTGCGATGAGAAAGCATATGCCTGATTTATTTGAGGAGCAACCTAATTTACTCAATGAACTGGTCACTCAACTATCACCTTCAATTCTTAAATCTGATGGAGTTCCTATATTTCGCACTGTCCAGCATTCTGGGGAATTCGTAATTACCTTTCCTAGAGCATACCATGCTGGCTTCAACTGTGGTTTCAACTGTGCCGAGGCCGTGAATGTTGCTCCTGTAGATTGGTTGCTGCATGGCCAGAATGCTGTTGAACTTTATAGTAAGCAGTGCCGTAAAACATCATTGTCACATGACAAGCTATTACTAGGATCAGCTCAGGAAGCCATACAAGCCCTTGCAGAAGTTCTTCTTGAAGGAAAGGAAACTCCAAAAAATTTGAAATGGAAAAGTGTCTGTGGGAAAGATGGTGTTCTTACTAATGCTGTTAAGACAAGGATAAAGATTGAGGAAGAGCGGATACAACGTCTGCAGACTCCCATAAAATTGGTGAAAATGGACATCAAGTTTGATTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTATGATTTGCACCTTTCTGCTGCAGGCTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGACACTCAAATTCGTTTTGCTCATGTGGATATGATGAAAGATTTGTTCTATTTCGTTATCCTATAGAGGAGCTAAAAGAGTTGGTTAGAGCATTAGAAGGAGGGTTAGAAGCTATCAAGGTTTGGGCAAATAGGACCTCTGGAATGGTTTCTGTAGATGCCAGGGACGTTTGTTTAGGTAAGCCACATGTGGACAGAGACATGTGCAAAACTAAGATCAATGAAGTGGAAAGTTCGTCTTCTTGTCCAAGAATCAAGAAGTCAAAACTAAATGACGATCCTCATAGTCATGTTTCTTCAGAATTAGTCCAGTCAGATTCTCAAGTGGAAAGTGCACCACAGCAGAACATTGTAGATAGTCATAATGGCAATGTTAATGTCAAAAGTTTGGTCATGGCTAATGAAGCTAAGGTTTCATGGAATTGTTGTGTGGGTTTAAATCTTAATGTTATGTCTGATCAAAATGAAAGTGACATCATGCATATTGCTGATAGAAAATCAAACAAGGGTATTGGTTGTGTTGAAAAGTTCGGTTGCTCAGAGTCACAAAAGGAACAAGATGATGTGGTCCTTGATAGTGAAGAAAATGTATCAGACAGGTTTTCTCCTGTTAAGAAGCATTACCCATCACGTTCTAGGGGTCATCGCACTTCAAGTAAATTTGACGGTGGCCAGATGCCTGGGGATGATCTGTTGATGCATCAGGGTATGAGAGTGCTACCTAACAGTGAATGTAAAACGGAAGCAGTAGACATGGACAGTTTCAATAAAAGCACATCTTTGACAAGCGAGAGCTTTCTAATTCAGAAGTTTGCTGCATCTGTTGAGCCTGTAAGCCTGGGCTCCATTGTGCTTGGAAAGCTGTGGTGCAGTAAGCACAAGATATATCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATGCTTAATCCATCAACAATCTGTAGCTATGTTTCCGAAGTTCTTGATGGTGGCTTAATTGGACCTCTTTTCAAGGTTAGCATAGAAGAACATCCAAGTGAAAGTTTCATGAACATGTCAGCAGAGAAGTGCTGGGAATCAGTTCTGGAGAGAGTAAATAGTGAGATCATCAGGCGTAGAAGCCTAGGGGAACTAGAACTTCCTCCATTGGAGCTTCTGCAAGGCATAAACGGTCTACAAATGTTCGGATTCCTTTCTCCATCAATCATCCAGGGTATTGAAGCTCTGGATCCCAGTCATCAATGTGGAGAATACTGGAACCGCAAGGAATTAGTCTCTTCTGTATCTTCCAGCAGTACAAGTGATGATGTTAAGCTTGTGCGTGGCAGTTCGAGTAGCCTGTCTGATGAAAATGATGATAAACTTATAGGAGAAAAATGTGACTCGTTCGAAGGGACGAAACTGGTTCTCGAAGGATTGTTGAAGAAAGCGAGCCTGGATGAGTTAATCACAATGCAGAAGTTACTGGGGTCTAGTGCAGAAAGTACTCAGTGGAGAGTGGAAATTGCGGCTCTGATAGAGGAGATCCAGAAAAGCTTGTAG 3087 0.4234 MEQSKLSAESPYKEISARWDPDEACLPVIDEAPVFHPTAEEFEDTLGYIAKIRPLAEPHGICRIVPPPCWTPSCPLKEKDIWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNTKMAMCRRLANPDSEVNAASESDEKFGFQSGPDFTLRDFQRYAAFFKECYFGKKDIKEDGQISDNQYQKRWEPSVKEIEGEYWRIIEQPTDEVEVYYGADLESGALGSGFPKADSLTKSDLDEYTLSGWNLNNIPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNHATSLEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSDGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQEAIQALAEVLLEGKETPKNLKWKSVCGKDGVLTNAVKTRIKIEEERIQRLQTPIKLVKMDIKFDLDKERECFACFYDLHLSAAGCQCSVDKYSCLRHSNSFCSCGYDERFVLFRYPIEELKELVRALEGGLEAIKVWANRTSGMVSVDARDVCLGKPHVDRDMCKTKINEVESSSSCPRIKKSKLNDDPHSHVSSELVQSDSQVESAPQQNIVDSHNGNVNVKSLVMANEAKVSWNCCVGLNLNVMSDQNESDIMHIADRKSNKGIGCVEKFGCSESQKEQDDVVLDSEENVSDRFSPVKKHYPSRSRGHRTSSKFDGGQMPGDDLLMHQGMRVLPNSECKTEAVDMDSFNKSTSLTSESFLIQKFAASVEPVSLGSIVLGKLWCSKHKIYPKGFKSRVKFFSMLNPSTICSYVSEVLDGGLIGPLFKVSIEEHPSESFMNMSAEKCWESVLERVNSEIIRRRSLGELELPPLELLQGINGLQMFGFLSPSIIQGIEALDPSHQCGEYWNRKELVSSVSSSSTSDDVKLVRGSSSSLSDENDDKLIGEKCDSFEGTKLVLEGLLKKASLDELITMQKLLGSSAESTQWRVEIAALIEEIQKSL 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3012g00003 1028 Pfam jmjN domain 33 66 IPR003349 -
Pral3012g00003 1028 SMART cupin_9 240 406 IPR003347 -
Pral3012g00003 1028 Gene3D - 793 931 - -
Pral3012g00003 1028 FunFam Putative lysine-specific demethylase JMJ16 793 931 - -
Pral3012g00003 1028 SMART JmjN_1 31 72 IPR003349 -
Pral3012g00003 1028 MobiDBLite consensus disorder prediction 720 745 - -
Pral3012g00003 1028 MobiDBLite consensus disorder prediction 98 119 - -
Pral3012g00003 1028 MobiDBLite consensus disorder prediction 104 119 - -
Pral3012g00003 1028 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 770 - -
Pral3012g00003 1028 MobiDBLite consensus disorder prediction 604 631 - -
Pral3012g00003 1028 SUPERFAMILY Clavaminate synthase-like 212 428 - -
Pral3012g00003 1028 Gene3D Cupin 17 390 - -
Pral3012g00003 1028 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Pral3012g00003 1028 Pfam F/Y rich C-terminus 849 936 IPR003889 GO:0005634
Pral3012g00003 1028 ProSiteProfiles FYR domain FYRC motif profile. 847 937 IPR003889 GO:0005634
Pral3012g00003 1028 ProSiteProfiles FYR domain FYRN motif profile. 787 845 IPR003888 GO:0005634
Pral3012g00003 1028 SMART fyrn_3 801 845 IPR003888 GO:0005634
Pral3012g00003 1028 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Pral3012g00003 1028 Pfam F/Y-rich N-terminus 798 842 IPR003888 GO:0005634
Pral3012g00003 1028 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Pral3012g00003 1028 MobiDBLite consensus disorder prediction 617 631 - -
Pral3012g00003 1028 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Pral3012g00003 1028 SMART fyrc_3 851 939 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3012g00003 Pral-Chr3012 49720 58071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3012g00003 789 944 JUMONJI Transcription Factor Family AT1G30810 56.410 3.93e-50 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral3012g00003 JmjC 1.8e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3012g00003 K11446 - gmx:100784581 1300.03