Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3008g00008 ATGGAAAGCTCAGACAAGTTTTCTCAGAGAAGAAACGGCTTGAATCTTAAGGCAACTGAACTACGGCTCGGATTACCCGGGTCGGAGTCACCCGAGAGGGATTTGGATTCGGAGGATAAGAACGAGTATCCGTTAGGCATACTCAAGAATCTTGTGTCTGGGGCCAAGAGGGGTTTCTCAGACGCCATTCATGGTGGTTCTGGGAAATGGGTTCTCTCTGGCAAAGGTGGTTCTGATATGGTTTTGGGTAAAGATTGTGGCTTGTTCTCTCCCAGAGGTGGTAACTCCGGCAAGACCACTGTCGGGTCGGATTCCGGCAATCATCAAGCGGGTTTGGGTCCCGCCGTTGTGAAAGATACTATTCCTCAGCCAACAAAGCCTTTGAATGAGAAGAAGCCTCAGTTTCCTGCTCCTGCTTCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGATCTTTTCGGAAGAACTCAATGGCTTCTCAGCCTCAAAAGAATGGTGATGATGCAGAATCAGGCAAGAGTGGATGTCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAGGCTGATCTCAACAACTTTGGCTCTTACAAGGAACTTTCTTCTGCACTGGAAAAGATGTTCAGTGGCTTTACAATGAGTCAATGCGGCTCTCATGGAGTTTCTGGTCGAGATAATATGAGTGAGAGTGGATTGATGGATCTTCTTAATGGATCGGAATACGTGCTCACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGATTCTTGCAAGAGGATGAGGATAATGAAGAGTTCTGAAGCCATTGGGTTAGCACCGAGAGCCATGGAAAAGTGCAGAAGTCGGAACTAG 891 0.4714 MESSDKFSQRRNGLNLKATELRLGLPGSESPERDLDSEDKNEYPLGILKNLVSGAKRGFSDAIHGGSGKWVLSGKGGSDMVLGKDCGLFSPRGGNSGKTTVGSDSGNHQAGLGPAVVKDTIPQPTKPLNEKKPQFPAPASKAQVVGWPPIRSFRKNSMASQPQKNGDDAESGKSGCLYVKVSMDGAPYLRKADLNNFGSYKELSSALEKMFSGFTMSQCGSHGVSGRDNMSESGLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSSEAIGLAPRAMEKCRSRN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3008g00008 296 ProSiteProfiles PB1 domain profile. 176 278 IPR000270 GO:0005515
Pral3008g00008 296 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 283 IPR003311 GO:0005634|GO:0006355
Pral3008g00008 296 MobiDBLite consensus disorder prediction 121 143 - -
Pral3008g00008 296 FunFam Auxin-responsive protein 171 288 - -
Pral3008g00008 296 Gene3D - 170 289 - -
Pral3008g00008 296 MobiDBLite consensus disorder prediction 27 41 - -
Pral3008g00008 296 Pfam AUX/IAA family 19 287 IPR033389 -
Pral3008g00008 296 SUPERFAMILY CAD & PB1 domains 171 277 - -
Pral3008g00008 296 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3008g00008 Pral-Chr3008 58996 62195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3008g00008 179 286 B3 DNA Binding Superfamily AT4G23980 30.556 1.19e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral3008g00008 AUX_IAA 3.3e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3008g00008 K14484 - vvi:100254204 432.95