LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3008g00004	ATGGCTCCAAAAAGAGGTGTAAAAGCTCCGGTTGCGGCTAAGAAGAAGCAGGACAAGGTGGTAAACCCGCTCTTTGAGAAGCGTCCGAAGCAGTTTGGGATTGGAGGTGCATTGCCTCCTAAGAGAGACCTGACCCGATTCGTCAAGTGGCCCAAGACTGTTCAAATTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGTTGAAGGTCCCTCCAGCTTTGAATCAGTTCACCAAAACACTAGATAAGAACCTTGCAACCAGCCTGTTCAAGATGCTCCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGAGACTCTTGAAGAGGGCTCAGGCAGAGGCAGAAGGAAAATCTACTGAAGCTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAATCATGTCACTTACCTTATCGAGCAGAATAAGGCACAGCTGGTTGTGATTGCTCATGATGTAGATCCAATTGAACTGGTTGTCTGGTTGCCGGCATTGTGCAGAAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAGGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTCTGTGCTTGACAACAGTCAAGAATGAGGACAAATTAGAATTCTCCAAGATTCTTGAGGCGATCAAGGCTAACTTCAATGACAAGTATGATGAGTACAGAAAGAAGTGGGGTGGTGGGATCATGGGATCTAAATCCCAAGCCAGGACCAAGGCCAAGGAAAGGCTCCTTGCTAAGGAAGCGGCACAGAGGATGTCTTAG	777	0.4672	MAPKRGVKAPVAAKKKQDKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKSTEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	46	63	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	90	103	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	185	209	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	217	237	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	29	46	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	124	144	IPR001921	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A family signature	66	85	IPR001921	-
	Pral3008g00004	258	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	42	234	-	-
	Pral3008g00004	258	Coils	Coil	101	121	-	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A/RS6 family signature	147	160	IPR018492	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A/RS6 family signature	163	173	IPR018492	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A/RS6 family signature	173	187	IPR018492	-
	Pral3008g00004	258	PRINTS	Ribosomal protein L7A/RS6 family signature	128	142	IPR018492	-
	Pral3008g00004	258	Gene3D	-	50	233	IPR029064	-
	Pral3008g00004	258	FunFam	60S ribosomal protein L7a	50	233	-	-
	Pral3008g00004	258	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	115	205	IPR004038	-
	Pral3008g00004	258	SUPERFAMILY	L30e-like	88	229	IPR029064	-
	Pral3008g00004	258	ProSitePatterns	Ribosomal protein L7Ae signature.	166	183	IPR004037	GO:0042254\|GO:1990904

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3008g00004	Pral-Chr3008	41176	43309	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3008g00004	1	258	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	86.047	5.60e-169	465

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3008g00004	K02936		-	mnt:21394091	479.174