Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2999g00003 ATGGGGAAAGCCAAGATTGCGATTAAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTCTCCAGCACCCGCAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGATACACTAAACAAATAGAGGAACATCATCATCCGCTCATGAATACCGACTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACGATCCTGAAGCACGAACTTCAACATTTGCAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTAGGCATTAACGAAGTAAAGAATTTGGAAAATCAACTGGAGATGAGTTTAAAACGTGTCCAGATCAAAAGGGATCAAATCTTAACTGATGAGATTAAAGAGCTACAACAAAAGGGAAATCATATCAGTCAAGAAAATGTTGAACTCTATCAAAGGACACAAGTTATTAGTAAAGAAAATGCAGAGTTAAAAAAGATTTATGAAGCAAGGGTTATGAATGAAGAAAACGAGAGATTCAATCTGCAGCTGAGCCAGCCAGAATCTCAATCTAGTGAGCCACTCACCAAAGCAATGGAACAGGGATTACGGCTGCTATAG 672 0.4062 MGKAKIAIKRIDNSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSTRKLYEYGSSSLKSIIERYTKQIEEHHHPLMNTDSEAKFWQREATILKHELQHLQELHRQLMGEQLSGLGINEVKNLENQLEMSLKRVQIKRDQILTDEIKELQQKGNHISQENVELYQRTQVISKENAELKKIYEARVMNEENERFNLQLSQPESQSSEPLTKAMEQGLRLL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2999g00003 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral2999g00003 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2999g00003 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2999g00003 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2999g00003 223 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2999g00003 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 193 - -
Pral2999g00003 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral2999g00003 223 Coils Coil 121 144 - -
Pral2999g00003 223 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pral2999g00003 223 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2999g00003 223 MobiDBLite consensus disorder prediction 200 223 - -
Pral2999g00003 223 Coils Coil 87 107 - -
Pral2999g00003 223 MobiDBLite consensus disorder prediction 200 214 - -
Pral2999g00003 223 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral2999g00003 223 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pral2999g00003 223 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral2999g00003 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2999g00003 Pral-Chr2999 11516 16433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2999g00003 1 205 MADS-box Gene Family AT2G22630 54.338 4.33e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2999g00003 K-box 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2999g00003 K09264 - gmx:100805092 277.33