Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral2999g00002 | ATGGGGAAAGCCAAGATTGCGATTAAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTCTCCAGCACCCGCAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGATACACTAAACAAATAGAGGAACATCATCATCCGCTCATGAATACCGACTCAGAAGCCAAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTAGGCATTAACGAAGTAAAGAATTTGGAAAATCAACTGGAGATGAGTTTAAAACGTGTCCAGATCAAAAGGGATCAAATCTTAACTGATGAGATTAAAGAGCTACAACAAAAGGGAAATCATATCAGTCAAGAAAATGTTGAACTCTATCAAAGGACACAAGTTATTAGTAAAGAAAATGCAGAGTTAAAAAAGATTTATGAAGCAAGGGTTATGAATGAAGAAAACGAGAGATTCAATCTGCAGCTGAGCCAGCCAGAATCTCAATCTAGTGAGCCACTCACCAAAGCAATGGAACAGGGGTATATTATATTCCTTCAAACTGGTGAATAA | 636 | 0.3962 | MGKAKIAIKRIDNSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSTRKLYEYGSSSLKSIIERYTKQIEEHHHPLMNTDSEAKELHRQLMGEQLSGLGINEVKNLENQLEMSLKRVQIKRDQILTDEIKELQQKGNHISQENVELYQRTQVISKENAELKKIYEARVMNEENERFNLQLSQPESQSSEPLTKAMEQGYIIFLQTGE | 211 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral2999g00002 | 211 | Coils | Coil | 104 | 127 | - | - | |
Pral2999g00002 | 211 | Pfam | K-box region | 73 | 154 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Pral2999g00002 | 211 | SUPERFAMILY | SRF-like | 2 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | ProSiteProfiles | K-box domain profile. | 70 | 162 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Pral2999g00002 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | FunFam | Agamous-like MADS-box protein AGL62 | 13 | 78 | - | - | |
Pral2999g00002 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Pral2999g00002 | 211 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Pral2999g00002 | 211 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 4 | 176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral2999g00002 | Pral-Chr2999 | 11516 | 16433 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral2999g00002 | 1 | 172 | MADS-box Gene Family | AT2G14210 | 53.158 | 1.60e-60 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Pral2999g00002 | K-box | 4.6e-15 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral2999g00002 | K09264 | - | gmx:100808145 | 253.062 |