Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2999g00001 ATGGGAAAAAGGAAGATTGCGATTAAGAGGATTGATGATATAACCAACAGGCAAGTGACTTTCTCAAAGAGACGAAGTGGTTTGTTCAAGAAAGCAAAGGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTCATGGTGTTCTCTAACACCGACAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGCTACAATAAACAGAAAGAGGAACATCCGCTTATGAATGCAGCTTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACGGTCTTGCGGCAAGAACTTCAACACTTGCAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTGGGCATTAACGAAGTGAAAAATTTGGAAAATCAACTGAAGATGAGTTTAAAATGTGTCCAGATCAAAAAGGATCAAATCTTAACTGATGAGATTAAAGAGCTACAACAAAAGGGAAATCAAATTTGTCAAGAAAATGTTGAACTTTATGGAAGGATACAATTCATTAGTAAACAAAATGCAGAGTTGAAAAAGATTTGTGAAGTAGCCGTTCTAAATGAAGGAAATGGGAGTTTCAATCCTCCATATACCAATCTGCAGCTGAGCCAGCAGCCACAATCTCAATCTAATTACAGCTGCTTTAGCAATAGTTCTGACCATGTTCTTGGGTTTTCAGACAACAATTTCTATGGGGCAGAAATGTTCGATTCAACAAGAT 727 0.3934 MGKRKIAIKRIDDITNRQVTFSKRRSGLFKKAKELAILCDAQVGVMVFSNTDKLYEYGSSSLKSIIERYNKQKEEHPLMNAASEAKFWQREATVLRQELQHLQELHRQLMGEQLSGLGINEVKNLENQLKMSLKCVQIKKDQILTDEIKELQQKGNQICQENVELYGRIQFISKQNAELKKICEVAVLNEGNGSFNPPYTNLQLSQQPQSQSNYSCFSNSSDHVLGFSDNNFYGAEMFDSTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2999g00001 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pral2999g00001 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pral2999g00001 242 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pral2999g00001 242 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral2999g00001 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2999g00001 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Pral2999g00001 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral2999g00001 242 Coils Coil 85 112 - -
Pral2999g00001 242 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2999g00001 Pral-Chr2999 3735 7745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2999g00001 1 220 MADS-box Gene Family AT2G22630 54.585 1.03e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2999g00001 K-box 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2999g00001 K09264 - gmx:100805092 252.292