Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2998g00003 ATGGCTTCACGCAGATTGTTGTCGTCTCTGATTCGATCCTCATTGCATCGATCTCCATTGAAGTCCTCCCTTACCAGCTCAAGGCCCAGAATTTCTTCCCCGAGCGGTGTGGGTCGTCCCTCTCCGTATGGCTACCTCCTCAACCGCATCGCTGAGTACGCCACTTCTGCGGCAGCTGCTACGCCACCGACTCCGGCGAAGAAGGACTCCGTTGGTGGCGGTGATGGAAAGATCGTCGACGAGTTCACCGGAAAAGGTGCGATTGGGCAAGTGTGCCAGGTCATTGGTGCTGTTGTCGATGTTAGATTCGAGGAGGGTCTGCCACCAATCTTGACTGCTCTTGAGGTTATGGATCACTCGATCCGATTGGTGCTGGAGGTGGCGCAACACTTGGGTGAGAACATGGTTAGAACCATTGCCATGGATGGGACTGAGGGGGTTGTTAGAGGACAGCGCGTGCTCAACACTGGATCCCCTATCACCGTTCCTGTTGGTAGAGCAACCCTTGGCCGCATCATTAATGTCATTGGGGAGGCTATTGACGAGAAGGGTGAACTTAAAACTGAGCACTTCTTGCCCATCCATAGAGAAGCTCCTGCTTTTGTTGAACAGGCAACTGAGCAACAGATTCTTGTTACAGGGATCAAGGTTGTGGATCTACTTGCTCCATACCAAAGGGGAGGAAAGATTGGGTTGTTTGGGGGTGCTGGTGTAGGAAAAACGGTGCTCATTATGGAACTTATTAATAATGTTGCAAAAGCTCATGGTGGGTTTTCTGTCTTTGCTGGTGTTGGAGAAAGAACTCGGGAGGGAAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTTATTAAGCTCGGAGATAAGCAGAGCGAAAGCAAGTGTGCCCTTGTGTATGGTCAAATGAATGAGCCTCCTGGTGCCCGTGCTCGTGTTGGTCTTACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTCATTGACAACATTTTCCGTTTTACTCAAGCCAACTCAGAGGTGTCTGCATTGCTTGGTCGTATTCCATCTGCTGTCGGTTACCAACCAACATTGGCTACTGATCTTGGAGGTCTTCAGGAACGTATTACAACCACCAAGAAAGGTTCCATTACCTCTGTCCAGGCTATATATGTGCCTGCTGATGACTTGACTGATCCAGCTCCGGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTATCACGACAGATCTCCGAGCTGGGTATCTATCCTGCTGTTGACCCCCTAGATTCTACATCTCGTATGCTTTCGCCACTTATTTTGGGTGAGGACCACTACAATACTGCTCGTGGTGTACAAAAGGTCCTTCAGAACTATAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTGACTGTTGCCCGTGCACGTAAAATTCAAAGGTTTTTGAGCCAGCCTTTCCACGTTGCAGAAGTGTTCACTGGTGCCCCAGGCAAATATGTAGATTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTCCCAGAGCAATCATTTTATATGGTTGGAGGTATTGATGAGGTCGTTGCCAAGGCGGACAAGATTGCTAAGGAATCGACTTCTTAG 1680 0.4863 MASRRLLSSLIRSSLHRSPLKSSLTSSRPRISSPSGVGRPSPYGYLLNRIAEYATSAAAATPPTPAKKDSVGGGDGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDHSIRLVLEVAQHLGENMVRTIAMDGTEGVVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDEKGELKTEHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVVAKADKIAKESTS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2998g00003 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Pral2998g00003 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Pral2998g00003 559 Gene3D - 438 559 IPR024034 -
Pral2998g00003 559 FunFam ATP synthase subunit beta 438 557 - -
Pral2998g00003 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Pral2998g00003 559 SMART AAA_5 226 498 IPR003593 GO:0016887
Pral2998g00003 559 MobiDBLite consensus disorder prediction 18 37 - -
Pral2998g00003 559 MobiDBLite consensus disorder prediction 18 34 - -
Pral2998g00003 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pral2998g00003 559 CDD ATP-synt_F1_beta_N 87 160 - -
Pral2998g00003 559 FunFam ATP synthase subunit beta 77 159 - -
Pral2998g00003 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
Pral2998g00003 559 CDD F1-ATPase_beta_CD 161 440 - -
Pral2998g00003 559 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Pral2998g00003 559 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Pral2998g00003 559 CDD ATP-synt_F1_beta_C 442 549 - -
Pral2998g00003 559 FunFam ATP synthase subunit beta 160 437 - -
Pral2998g00003 559 Gene3D - 160 437 IPR027417 -
Pral2998g00003 559 NCBIfam F0F1 ATP synthase subunit beta 88 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pral2998g00003 559 PIRSF ATPase_subunit_beta 7 559 - -
Pral2998g00003 559 PANTHER ATP SYNTHASE 70 556 - -
Pral2998g00003 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Pral2998g00003 559 Gene3D - 78 159 - -
Pral2998g00003 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2998g00003 Pral-Chr2998 38026 42254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2998g00003 124 496 Primary Pumps ATPases(2) AT1G20260 28.678 2.26e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2998g00003 K02133 - pda:103719013 944.495