Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2994g00001 ACAGCGCTTCTCAATCTGTCCATCAATGAGAGTAACAGAACAAATGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAATGGCAGTATGGAGGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCAGTTCTAGATGAGAACAAGATTTCAATAGGAGCAGCTGGGGCTATTCCTGCTTTGATTAGCTTGCTCTGTGAAGGTACTCCCAGAGGGAAAAAGGATGCTGCTACAGCTATTTTTAACCTTTCTATCTATCAGGGAAACAAAGCTAGAGCTGTAAAGGCTGGTATAGTAGCGCCACTAATGACATTTCTTATTGACGCTGGAGGTGGGATGGTGGATGAAGCACTGGCTATACTGGCAATTCTTGCAAGCCATCCAGAAGGCAGGACAGCTATCGGTCAAGCTGAACCAATTCCTATTCTAGTCGAGGTTATACGAACCGGTTCTCCACGGAATAGGGAGAATGCTGCTGCCGTGTTGTGGTCTCTTTGCATGGGAGATCCTCTGCAGTTGAAATTGGCAAGGGACCATGGTGCAGAAGAAGCACTGCGGGAATTGTCGGAAAGTGGCACTGACAGGGCCAAAAGGAAAGCGGGAAGTATATTAGAACTCTTGCAAAGAATGGAAGTGGATGATAATTCGCCAAAGTCTTAA 672 0.4509 TALLNLSINESNRXTNVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKISIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLMTFLIDAGGGMVDEALAILAILASHPEGRTAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCMGDPLQLKLARDHGAEEALRELSESGTDRAKRKAGSILELLQRMEVDDNSPKS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2994g00001 224 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 20 62 IPR000225 GO:0005515
Pral2994g00001 224 PANTHER U BOX DOMAIN-CONTAINING 1 213 - -
Pral2994g00001 224 Gene3D - 119 219 IPR011989 -
Pral2994g00001 224 Gene3D - 1 118 IPR011989 -
Pral2994g00001 224 SMART arm_5 132 172 IPR000225 GO:0005515
Pral2994g00001 224 SMART arm_5 91 131 IPR000225 GO:0005515
Pral2994g00001 224 SMART arm_5 9 49 IPR000225 GO:0005515
Pral2994g00001 224 SMART arm_5 50 90 IPR000225 GO:0005515
Pral2994g00001 224 FunFam RING-type E3 ubiquitin transferase 1 218 - -
Pral2994g00001 224 Pfam Armadillo/beta-catenin-like repeat 51 89 IPR000225 GO:0005515
Pral2994g00001 224 SUPERFAMILY ARM repeat 2 212 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2994g00001 Pral-Chr2994 6 1108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2994g00001 1 216 U-box Gene Family AT3G54850 75.463 3.35e-100 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2994g00001 - - gmx:100777452 380.948