Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2990g00017 ATGTACATCAAGGAAATTTGCTTGGAAGGCTTCAAATCGTATGCTACCAGAACTGTTGTTCCAGGTTTCGATCCCTACTTCAATGCCATCACGGGGTTGAACGGTTCCGGCAAGTCGAACATACTTGATTCGATTTGCTTTGTACTTGGGATCACGAATTTGCAGCAGGTTCGGGCTTCTAACCTGCAGGAGCTCGTTTATAAGCAAGGACAGGCAGGAATTACAAAAGCTACGGTGTCGATTGTGTTTGATAATGCGGATAGGAGTCGGAGCCCTCTTGGGTATGAAGACCATCCAGAGATTACAGTGACAAGACAGATTGTGGTTGGAGGAAGGAACAAATATCTGATCAATGGGAAACTTGCCCAGCCTAGTCAAGTTCAAAACCTTTTTCATTCAGTGCAGCTGAATGTTAATAATCCACATTTTCTCATAATGCAAGGGCGCATCACCAAGGTTTTAAATATGAAACCACCAGAGATATTGTCGATGCTTGAGGAAGCGGCAGGGACAAGAATGTATGAGACGAAGAAAGAGGCTGCACTTAAAACACTTGAGAAAAAGCAGAGTAAGGTTGATGAGATTAATAAGCTTCTTGACCAGGAGATACTTCCTGCTTTAGAGAAGTTAAGGAAAGAAAGGACACAGTACATGCAATGGGCTAATGGCACTGCCGAGTTAGATAAGCTGAGAAGGTTTTGTGTTGCTTACGAATATGTTCAAGCAGAGAGGATCAGAGACACTGCAGTGTTTGAGGTCGAACAAGTGAAGGCCAAGATAGCCGAGATTGATGACTCTACTAAGACCACAAAAGTGGAGGTACAGGCAATGGAGACCAAAATGGCAAGGCTGGCAGCAGAAAAGGAAGAACGCATGGGTGGGGAAGTGAAATCTTTGTCAGACAAAGTAGATGCACTTTCACAGAATCTCGTGAGGGAGACATCTATACTAAATAATAAAGAGGATACTCTGAGAAGTGAAAAATCCAATGAAGAAAATATCGTCAATAATATTGAAGACTTGAAGCAATCTGTTGAAGAGAAGGCCTTAGCTGTAAAAAAGGCTGAAGAGGGTGCTGCTGATCTGAAGAGGAGAGTTGATGAGCTTTCTAAGAGTTTGGAGGATCATGAAAAGGAATACCAGGGTGTATTAGCTGGGAAGAGCAGCGGAAACGAGGAGAAATGCTTAGAGGATCAGCTAGCTGATGCAAAGATAGCAGTTGGGAATGCTGAAACAGAAATGAAACAACTAAAAACTAAAATTAGTCACTGTGAAACAGAACTGAAAGAGAAAACACATCAATTAAGGTCAAAACAGGAAGAAGCTACTGCTGTAGAAAATGAGCTAAGTGCTAGAAAGAAAGATGTGGAGACTGTGAAGATGCAATTGGAGTCTCTTAGTTATAAAGATGGCGAGATGGAATCTTTGCAGAAGGAGCGCGCATCTGAGATGGAGTCAGTGCAAAAGTGGAAGGATGAAATACGCAAGCTTTCAGCACAATTAGCAAATGTTGAGTTTACATACCGTGACCCAGTCAAAAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCGAGACTCATCAAAGTAAAGGACAGGGCTGCAATGACCGCCTTGGAGGTTACTGCTGGTGGAAAGTTGTTCAATGTTGTAGTTGACACAGAAAATACTGGAAAACAGCTACTGCAGAACGGTGATTTAAGAAGAAGAGTGACAATTATACCTTTAAACAAAATTCAGTCTCATAATGTTCCCTCTAGAATTCAACGAGCTGCTTCTAGATTGGTTGGTGAGGACAATGCTGAGCTGGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCGATGGAATATGTATTTGGTTCCACCTTTGTTTGCAAAAACACTGATGCTGCTAAGGAGGTGGCATTTAATCGGGAGATTCGAACCCCCAGTGTCACTCTTGAAGGGGACATATTTCAGCCAAGTGGTCTTTTGACTGGTGGAAGCCGAAAGGGTGGCGGCCAACTTTTAAGGCAACTTCATGATTTAGCAGAGGCTGAGTCAAAACTTTCAATACATCAAAGAAGGCTGTCTGAGGTTGAGGCAAAGATTACAAAGCTTCTTCCTCTTGAGAAGAAATGGAAAGACCTCAAAACACAGTTGGAGCTTAAATCATATGATCTTTCATTGTTTCAAAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGGGAACTAGTGAAGAAGATTGAGCAAGAACTTGCAGAAGCAAAATCTGCAGTCAAGGAAAAGCAAATCATTTATGAAAACTGTGTGAAGGCTGTTTCATCGCTTGAGAAATCAATTAAAGAACATGATAATAATCGTGAAAGTAGGCTAAAAGACCTGGAGAAGAAGATAAAGTCATTCAAATCCCAAATGCAGTCATCTTTAAAAGATCTTAAGGGACATGATAATGATAAGGAGAGACTTGTGATGGAAATGGAAGCTGTTATTCAGGAGCGTGTGTCCTTGGAGAATCAATTAACTTCTTTAAGGACACAAGTTCATAATCTTGAATCAGAAGTAGAAGAACAAAAAATAAAGGTTGCTGCTGCAAGGACCGATCATGATCAGGTTCATTCAGAGCTAAATTCAGTTCGCCTAAAAATGAAGGAATGTGACAAGGAAATAAGTGTTATCATCAAGGAGCATAAAGTACTTGAACATAAACTCAGTGAAAATAATCTTGAAAGGAAGAGAATGGAGAATGAGGTAAAACGGATGGAGATGGAACAAAGGGACTGTTCGATCAGGGTGGAGAAATTGATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGCTGTTTGGCAAAAATGGGACTGATTATGATTTTTCTTCTCGTGATCCCAGTAAAGCAAGGGAGGAACTTGAGAAGCTACAAGCTGAGCAGGCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTCATGGCGATGTTTGAGAAGGCAGAGGATGAGTATAATGATTTGATGTCCAAGAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAAAAGGAAACACTAAATGTTACCTGGGTTAAAGTCAACAAGGACTTCGGATCCATCTTTTCTACTTTGCTTCCGGGGACAATGGCGAAGTTAGAACCTCCGGAAGGTTGCAGTTTTCTTGATGGTCTTGAAGTTCGCGTTGCGTTTGGGAGCGTGTGGAAACAGTCCCTGTCAGAACTAAGCGGTGGTCAAAGATCACTCCTTGCACTTTCTCTGATTCTCGCACTGCTTCTTTTCAAGCCTGCTCCAATTTACATCCTTGACGAGGTTGATGCGGCACTCGATTTAAGCCACACACAAAACATAGGGAGAATGATAAAGACCCACTTTCCTCACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAATGCAAATGTTCTCTTCCGGACAAAATTTGTGGATGGTGTGTCAACGGTTCAGCGAACTGCAACAGCTAGGCAGAATGGCCACGTGTAG 3537 0.4167 MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNADRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGTAELDKLRRFCVAYEYVQAERIRDTAVFEVEQVKAKIAEIDDSTKTTKVEVQAMETKMARLAAEKEERMGGEVKSLSDKVDALSQNLVRETSILNNKEDTLRSEKSNEENIVNNIEDLKQSVEEKALAVKKAEEGAADLKRRVDELSKSLEDHEKEYQGVLAGKSSGNEEKCLEDQLADAKIAVGNAETEMKQLKTKISHCETELKEKTHQLRSKQEEATAVENELSARKKDVETVKMQLESLSYKDGEMESLQKERASEMESVQKWKDEIRKLSAQLANVEFTYRDPVKNFDRSKVKGVVARLIKVKDRAAMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHNVPSRIQRAASRLVGEDNAELALSLVGYEEELKSAMEYVFGSTFVCKNTDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGQLLRQLHDLAEAESKLSIHQRRLSEVEAKITKLLPLEKKWKDLKTQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELAEAKSAVKEKQIIYENCVKAVSSLEKSIKEHDNNRESRLKDLEKKIKSFKSQMQSSLKDLKGHDNDKERLVMEMEAVIQERVSLENQLTSLRTQVHNLESEVEEQKIKVAAARTDHDQVHSELNSVRLKMKECDKEISVIIKEHKVLEHKLSENNLERKRMENEVKRMEMEQRDCSIRVEKLIEKHAWIASEKQLFGKNGTDYDFSSRDPSKAREELEKLQAEQAGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTATARQNGHV 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2990g00017 1178 Coils Coil 736 763 - -
Pral2990g00017 1178 Gene3D - 995 1178 IPR027417 -
Pral2990g00017 1178 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pral2990g00017 1178 Coils Coil 178 198 - -
Pral2990g00017 1178 Gene3D - 591 666 - -
Pral2990g00017 1178 Coils Coil 324 379 - -
Pral2990g00017 1178 Coils Coil 894 928 - -
Pral2990g00017 1178 FunFam Structural maintenance of chromosomes 2 1 202 - -
Pral2990g00017 1178 Coils Coil 393 455 - -
Pral2990g00017 1178 Gene3D - 1 203 IPR027417 -
Pral2990g00017 1178 Coils Coil 967 1026 - -
Pral2990g00017 1178 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Pral2990g00017 1178 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pral2990g00017 1178 Gene3D - 812 893 - -
Pral2990g00017 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1162 IPR027417 -
Pral2990g00017 1178 SUPERFAMILY Tropomyosin 295 501 - -
Pral2990g00017 1178 Coils Coil 789 809 - -
Pral2990g00017 1178 PIRSF SMC 1 1163 IPR024704 GO:0005524|GO:0016887
Pral2990g00017 1178 Coils Coil 473 507 - -
Pral2990g00017 1178 Coils Coil 817 865 - -
Pral2990g00017 1178 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Pral2990g00017 1178 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1173 - -
Pral2990g00017 1178 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Pral2990g00017 1178 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pral2990g00017 1178 FunFam Structural maintenance of chromosomes 2 518 590 - -
Pral2990g00017 1178 Coils Coil 679 699 - -
Pral2990g00017 1178 Gene3D - 427 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2990g00017 Pral-Chr2990 50078 59660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2990g00017 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 2.57e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2990g00017 K06674 - gmx:100788674 1946.01