Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral298g00004 ATGGAATCCTCAAAACCCATTATCACCGTCCCAGGAGTAACTTCAATCGTCTTCTTCATAGTTGTCAGCTTCATCAGAACTGGTATTTCTCAGACACCGAATTACGTTGGAGACGACTGTCATAACAAGACTTCACAAGCTCTTACAGCCTCCTACAAAGCCAACCTTAACCAGCTACTCTCAAGGCTGTCCAACGATGCTTCCATGAGCAAACACTTCAGCAACAACGCCATCGGAAACACCACTAACGCCGCCGTGTATGGCCTCTACGACTGCCGTGATGATGTTGCTCAATCCTTCTGCCAGTTCTGTGTCTCCACTGCCACGAGAGAGGTTCTCCAACGTTGCCCAAGTCAATATTCTGCTGTAATATGGTACAGCTACTGCATCCTGCGATACTCTAACGAGAACTTCTTTGGGAAGGCGATGATGAGCCTGTCATGGTCGGCGGAAGGAGAGAAGAAGGTGTTGGATCCGATGGAGGGGAAGAAGGTGGAGAGTTACATAAGAAGTCTGATCGGGGAAGCCACGGAGGAGACAAACAGATTGAGCGCATGGGGAGAGTTTAATTTAGGTGGTGGAACAAGATATGCGCTGGTACAGTGCAGTAAAGACCTTACCAGTGAGGGTTGTAGGCAGTGTTTGGAGGCTATGGTGAACAAGGCAATTCAATGCTGTGAGCAGAAGCAAGATTGGCAAGTGGGAACGCCAAGCTGTATGGTCAAGTACACTAATTACATGTTTTACCAGTCACCATTTTCTCATAATCCTAGTACAGCCAATCATGGAGTTAGCAAGTCAAAAGCCTTGATCATAAGCACAAGTGTATTAGTAACTGTGACTGTACTCAGTTTTTCTTTCTACCTCTTCAGACGAAGCAAGAGGAGGAAAGATGAAACGTCATTGGAGAGCACTCCAATAGTTTATGACCCTTCCCAAAGAGATAGTTCACTAAATACTGACCTTCCCATTGTCCCTTTGCTTGCGATTCAACACAGCACTCATCACTTTTCAGAAGATTCTAAATTGGGAGAAGGTGGATTTGGCCCTGTCTATAAGGGAACACTACCAAATGGAAAGGAAATTGCTGTGAAAAGACTCTCTCAAACTTCAGGTCAAGGTTCACAGGAATTCATGAATGAAGTGATATTCATAGCAAAATTGCAACATAGAAACCTTGTTAGACTTTTGGGTTGTTGCATGGAGGAAAATGAAAAGTTGCTTGTATTGGAGTACATGCCAAATTCTAGCCTTGATTCACACCTTTTTAATGAAGAAAATAGAAAGAAACTGGATTGGAAACAAAGATTACATATTATTAATGGAATTGCAAGAGGACTTTTGTATCTTCATGAAGATTCTCGACTTAAAGTAATTCATAGAGATTTGAAAGCCAGCAATATCCTTTTGGATTATGAGATGAACCCTAAAATATCAGATTTTGGATTGGCAAGAACCTTCGAAGGAGTGCAAAATCAACAAAATACAAGACGAATAATGGGTACATATGGTTATATGGCTCCGGAATATGCTATGGAAGGATTATTTTCAGTGAAATCAGATGTTTTTAGTTTTGGAGTTCTTTTACTAGAAATTATATGCGGGAAAAGGATTAGTGGCTTCTATCTCTCTGAACATGGTCAAAGTCTTATACTTTATGCTTGGAATTTGTGGTGTGAAGGAAAATGGTTGGAGTTGATGGACCCAATACTAGAAAATTCATACATTGCAAATGATGTTTTGAAGTGCATACATATTGGTTTACTTTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTATTGTTGTCATGCTTGCAAGTGACACAATGACCTTTGCCAGACCTAATCGTCCTGCATTTTCAGTAGGAAGAATGGTCCTAGGAGATTCATCTACTTCAAAAAATTCCAAAGATGCTTCTATTAATGAGGTAACCTTGTCTCACATCAAACCCAGGTGA 1968 0.4131 MESSKPIITVPGVTSIVFFIVVSFIRTGISQTPNYVGDDCHNKTSQALTASYKANLNQLLSRLSNDASMSKHFSNNAIGNTTNAAVYGLYDCRDDVAQSFCQFCVSTATREVLQRCPSQYSAVIWYSYCILRYSNENFFGKAMMSLSWSAEGEKKVLDPMEGKKVESYIRSLIGEATEETNRLSAWGEFNLGGGTRYALVQCSKDLTSEGCRQCLEAMVNKAIQCCEQKQDWQVGTPSCMVKYTNYMFYQSPFSHNPSTANHGVSKSKALIISTSVLVTVTVLSFSFYLFRRSKRRKDETSLESTPIVYDPSQRDSSLNTDLPIVPLLAIQHSTHHFSEDSKLGEGGFGPVYKGTLPNGKEIAVKRLSQTSGQGSQEFMNEVIFIAKLQHRNLVRLLGCCMEENEKLLVLEYMPNSSLDSHLFNEENRKKLDWKQRLHIINGIARGLLYLHEDSRLKVIHRDLKASNILLDYEMNPKISDFGLARTFEGVQNQQNTRRIMGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIICGKRISGFYLSEHGQSLILYAWNLWCEGKWLELMDPILENSYIANDVLKCIHIGLLCVQEDAADRPTMSTIVVMLASDTMTFARPNRPAFSVGRMVLGDSSTSKNSKDASINEVTLSHIKPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral298g00004 655 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Pral298g00004 655 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral298g00004 655 Gene3D - 34 138 IPR038408 -
Pral298g00004 655 Gene3D - 160 248 IPR038408 -
Pral298g00004 655 FunFam Liguleless narrow1 413 616 - -
Pral298g00004 655 Pfam Protein tyrosine and serine/threonine kinase 340 606 IPR001245 GO:0004672|GO:0006468
Pral298g00004 655 Gene3D Transferase(Phosphotransferase) domain 1 413 618 - -
Pral298g00004 655 SUPERFAMILY Protein kinase-like (PK-like) 321 626 IPR011009 -
Pral298g00004 655 Pfam Salt stress response/antifungal 165 246 IPR002902 -
Pral298g00004 655 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Pral298g00004 655 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Pral298g00004 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 653 - -
Pral298g00004 655 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Pral298g00004 655 SMART serkin_6 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral298g00004 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 412 - -
Pral298g00004 655 CDD STKc_IRAK 343 608 - -
Pral298g00004 655 FunFam Cysteine-rich receptor-like protein kinase 28 36 137 - -
Pral298g00004 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral298g00004 Pral-Chr298 55097 64109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral298g00004 17 655 Receptor kinase-like Gene Family AT4G05200 40.835 3.15e-169 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral298g00004 PK_Tyr_Ser-Thr 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral298g00004 - - gmx:100795922 798.119