Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2987g00002 ATGTGCCCAGCGGAAGGGAGATTGAAAGTCCACTGTGATGGGTCTTATGATGGTAAAACTGATGCTGTTGCTATTGGAATTGTGAATAGGGATAAGGAAGCAAAAGATTTGGAATTGACCAATATGACCTTCGAAGTGGATTATGCTGAGTTTTGTTGGTGCTGCAAAAAGAATTCTGTTGATGATGTGGATTTGAAGGGTAAGTGGGAGATGCAGACTGTCTTGGTGGCTTTAGCAGAGTTTGATGGAGCGGATATTACCCTTAAATCTAGAGAGGGGCGTACTGAGACAACAAATTGGATTGCTGTTGAGTGTAGAAAAGGGTATGGCTCCTCAGCCTCCCTTTCTCTCGCCTACACCATCAGAGCTGCCTTCAACCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCGTCTCTCTCCAGAAGACAGCTCCTCTCCGTTGACAAATCCGACCAAACTCCAGGCTGCCTCACCGGCAACCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGCCACCGACCGCCAGAAGCTGGCCGACTGTGGTATTGGGTTCGGCACCGATGCTGCCGGCGGCAAGGGCGGCCAGTTCTACATCGTCACTGACCCTTCCGACAACGACCCGGTGAACCCAGCTCCGGGAACTCTTCGGCACGCCGTAATCCAAGATGTGCCCCTCTGGATCGTCTTCGCTGGCAACATGATGATCACCCTGAAGCACGAGCTCATGTTCAACAGCTTCAAGACCATCGACGGACGTGGAGCCAGCGTCCACATCACCGGCGACGGCTGCATCACCCTGCAGTACGTCTCCAACATCATCATTCACAACGTGCACATCCACCACTGCAGGCCGTCGAGCAAGACAATGATACGGGCTAGTCCAACAAAGGTAGGATTGAGAGGGGGATCGGACGGCGACGGGGTGTCCATCTATGGGTCACAGAAGATTTGGATAGACCATTGCAGGCTGGCGTACTGCACGGACGGCCTAATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCGCATCACGACGAGGTGATGCTGCTGGGGCACGATGATAGGTATGAAGGGGATAGGATGATGCAGGTGACAGTAGCATTCAATCATTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGGTGCAGACACGGGTACGTGCACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCGATCGGCGGCAGTGCGGCGCCCACCATAAACAGCCAGGGCAACCGCTACACTGCTCCCGCCAATGCTAATGCTAAAGAGGTCACGAAGCGGGTGGACACAGACGAGAGAGAGTGGGCGACTTGGAATTGGAAGACGGAGGGGGACTTAATGGTGAACGGAGCATACTTCGTGGGATCGGGAGATTGGGTGAGCACCCAATACGCCCAGGACTCGTCTCTGCCACCGCAATCCGCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAATGATCCCAGCGAAGGCGGGGATATATATCCGGCGTTCACGGAGAACGACGGCAGTGGCATTTCTGGAGACGGGATCATGCCCAGGCATGGCAGCACCAACAATGCTTCACTCCTGTCTCCATTATTTGCATTTCTCCTTTTCTGCACTATTGCATCTACTGTTATATTAATATTGATGAGTCTGTATTAA 1701 0.5338 MCPAEGRLKVHCDGSYDGKTDAVAIGIVNRDKEAKDLELTNMTFEVDYAEFCWCCKKNSVDDVDLKGKWEMQTVLVALAEFDGADITLKSREGRTETTNWIAVECRKGYGSSASLSLAYTIRAAFNPEHVVMDVQRRINASLSRRQLLSVDKSDQTPGCLTGNPIDDCWRCDPNWATDRQKLADCGIGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTLRHAVIQDVPLWIVFAGNMMITLKHELMFNSFKTIDGRGASVHITGDGCITLQYVSNIIIHNVHIHHCRPSSKTMIRASPTKVGLRGGSDGDGVSIYGSQKIWIDHCRLAYCTDGLIDAIMGSTGITISNNHFSHHDEVMLLGHDDRYEGDRMMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPANANAKEVTKRVDTDEREWATWNWKTEGDLMVNGAYFVGSGDWVSTQYAQDSSLPPQSALHIDLLTLNAGVFNDPSEGGDIYPAFTENDGSGISGDGIMPRHGSTNNASLLSPLFAFLLFCTIASTVILILMSLY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2987g00002 566 Pfam Pectate lyase 244 424 IPR002022 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 185 202 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 209 234 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 482 505 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 309 330 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 389 408 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 411 430 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 245 261 IPR018082 -
Pral2987g00002 566 PRINTS Pollen allergen Amb family signature 453 477 IPR018082 -
Pral2987g00002 566 PANTHER PECTATE LYASE 18-RELATED 126 504 IPR045032 GO:0030570
Pral2987g00002 566 Gene3D - 162 504 IPR012334 -
Pral2987g00002 566 FunFam Pectate lyase 162 504 - -
Pral2987g00002 566 SMART amb_all 237 434 IPR002022 -
Pral2987g00002 566 SUPERFAMILY Pectin lyase-like 163 502 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2987g00002 Pral-Chr2987 23216 27256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2987g00002 126 564 Polysaccharide Lyase AT3G53190 60.850 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2987g00002 K01728 - gmx:100808438 613.224