Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2980g00001 ATGAGGAGTCCAAGGGTAAAAGGGCAGATCACGCCATGTTGTAGCAAGGTAGGGATAAAGAGAGGACCATGGACGCCGGAGGAAGATGAGGTTTTGGCCAATTTCGTGAAGAAGGAAGGTGAAGGACGGTGGCGCACGCTTCCCAAGAGGGCGGGGCTGCAACGCTGCGGCAAGAGCTGCCGTCTCCGATGGATGAACTATCTTCGTCCCTCCGTCAAGAGAGGCCATATTGCTCCGGACGAGGAAGATCTCATCCTTCGCCTTCACCGCTTGCTGGGCAACAGGTGGTCTCTGATAGCTGGGAGGATACCTGGAAGGACCGATAACGAGATCAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTCATAAGTCAGGGAATAGACCCTAGGACTCACAAGCCCTTACTCACACTCGCCAGTAATTCCAAATCTCAGCAAGCCTATCATGAATCCAATACAAGCACATCCAATAATCCTCAATCATCAGTCCCAGAAATTAATAATGTCTCCGCTTGCGCAAGAGAGATTGGTGGCTGCAGCCGGCAAGATCAGACAAACGCTATCCAAAACAACAGTTCTATCACTGTTGGGAATAACTGGGGGAGAAGTAGCGGCAAAGTGGTGAGGCTCGAGAGTGGGGTTGAGGTTGAAGGAGAAGTTGGGAAGATTACGGGGGAGGAAGATGCCCTATCTTCTTTTCTGGAATCTTTGATCAACGACAACGAAGTACTTGGGAATCAACAGACGACGCAGGCTGTCGTCGACCACCAAGTATTTCCGGCCCCGCCGCCACATCCAATGGCTTCTTCTTCCCAGCAATTTTTCGATCTTTCCTTCTGGGAAGCTGAATTCCAGAGTTTCGGAGGCGATCAACAGTATGGTTGCTCCTTCAAGTAA 900 0.5067 MRSPRVKGQITPCCSKVGIKRGPWTPEEDEVLANFVKKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLLTLASNSKSQQAYHESNTSTSNNPQSSVPEINNVSACAREIGGCSRQDQTNAIQNNSSITVGNNWGRSSGKVVRLESGVEVEGEVGKITGEEDALSSFLESLINDNEVLGNQQTTQAVVDHQVFPAPPPHPMASSSQQFFDLSFWEAEFQSFGGDQQYGCSFK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2980g00001 299 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Pral2980g00001 299 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 193 - -
Pral2980g00001 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Pral2980g00001 299 Pfam Myb-like DNA-binding domain 79 119 IPR001005 -
Pral2980g00001 299 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pral2980g00001 299 FunFam Myb transcription factor 18 74 - -
Pral2980g00001 299 SMART sant 73 121 IPR001005 -
Pral2980g00001 299 SMART sant 20 70 IPR001005 -
Pral2980g00001 299 CDD SANT 79 119 IPR001005 -
Pral2980g00001 299 FunFam transcription repressor MYB5-like 78 147 - -
Pral2980g00001 299 CDD SANT 23 68 IPR001005 -
Pral2980g00001 299 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pral2980g00001 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Pral2980g00001 299 Gene3D - 78 161 - -
Pral2980g00001 299 Gene3D - 21 73 - -
Pral2980g00001 299 MobiDBLite consensus disorder prediction 142 165 - -
Pral2980g00001 299 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2980g00001 Pral-Chr2980 518 2136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2980g00001 6 241 MYB Transcription Factor Family AT3G13540 54.812 1.16e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2980g00001 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2980g00001 K09422 - qsu:112003883 294.664