Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2979g00003 ATGATCATGGGGAAGAGCGATATTCTCCACCAGTACAACCCTTCTCAGGTTTCGCAACTTGGGATGAGAAATGCAGCAGATTGGCACTACATTTTGGACAAGAAGAGAGAGAAGTGGAAGAATAGTCGTAAAACCCAAAGCCCGTTTCAATGGTTTCCCTGGTTCTTTTGTTTGTGGATTCTTCTGCTCTCCATTCGTGTGAAGCCGGTTTTGGGTGAAGGAGATCGTTGGGATGGGGTGGTCGTCACAGAATCAAATTTCTTGGCACTTCAAGCGTTCAAGCAAGAGCTGATTGATCCCAAAGGCTTCCTGCGAAGCTGGAATGACAGTGGTTTCACTACTTGTTCTGGAGGTTGGGTTGGAATCAAGTGTGCCCAGGGTCAGGTTATCGTGATCCAGCTTCCGTGGAAGGGACTGAGAGGGCACATCACAGAGAGGATAGGCCAACTTGAAGGCCTTCGAAAGCTTAGTCTTCATGATAATCAAATTGGTGGGTCAATCCCTTCCTCATTGGGACTCCTTCCTAATCTCAGAGGGGTCCAGCTATTCAACAATAGGCTAGAAGGGTCCATCCCTCCTTCATTAGGTTCTTGCCTTTTGCTTCAGTCCTTAGACCTAAGTAATAACTTACTCACAGGGAGAATCCCTGATAGCCTATTCAATTCTTCTAAGCTTTATTGGCTTAATTTGAGCTTCAATTCCTTCTCTGGTTCAATACCGGCTACCCTCTCTCGCTCACCTTCTCTCACCTTCGTTTCTCTCCAACACAATAATCTTTCTGGCCCCATCCCAAACTCATGGGGCGGGGCTCTGAAAAATGATTTCTTTCGGCTTCAGAATTTGATCCTAGACCATAACTCATTCTCTGGAACCATTCCTGCTTCTTTTGGCAGCTTAGCTGAACTCAGAGAGATTTCTCTGAGTCATAATCAGCTTAGCGGAGTTATCCCAAATGAAATAGGGAGCCTTTCTAGACTAACAACGTTAGATTTTTCAAATAATGCCCTGAACGGAAGTTTGCCTGCTAGTCTCTCTAAGTTGTCATCGCTTACTGTGTTGAATGTTGAGAACAACCACCTTGATGACCAAATCCCTGAATCTCTAGGTAGATTACGTAATCTTTCTGTTCTTAGTTTGAGGGGAAATCAACTTAATGGTCACATTCCTGAAAGTGTTGGCAACGTTTCCTCGCTTAAACAGATTGATCTGTCACTGAATAATCTCAGTGGTGAAATCCCATCCTCCTTTAACAATTTACGTAGCCTTAATTTCTTCAATGTTTCTTACAATAACCTCTCTGGTCCTGTTCCCTCCTTACTTGCCCAAAAATTTAACTCGAGCTCATTTTTGGGTAATATTCAACTATGTGGGTACGACCCTTCAATCCCATGTCCTTCTCCAGCACCATCTGGGATTGTCTCCGCTCCATCTTCTGAAGCATCGAAACACCATCATCGTCGGAAACTACATATCAAAGACATAATTCTGATAGCAGCAGGGGCTCTCCTCGTACTCCTCGTAATAATATGTGGAATCCTGATCTTCTTCTTGATCAGAAGAAGAGCAGCATCGAAAGCAGAGAAAAAGGCAAGTGCTGGCACTTCTGGAACCGGAAAAGGAGTTGCTGCAGCAGCAGCAGCAGCTGCAGCTGCCGGTGAAGCCGAGGCCGGCGGTGAGGCTGGAGGGAAACTAGTCCATTTTGACGGCCCCACAGCCTTTACAGCCGATGATCTTTTGTGTGCAACCGCAGAGATAATGGGAAAGAGCACCTACGGAACAGTGTACAAAGCCACCTTGGAGGATGGAAGTGAGGTTGCAGTGAAGAGACTGAGAGAAAAGATCACCAAAGGCCAGAGAGAATTTGAATCTGAGGTTAACATTCTTGGGAAAATTCGTCACCCAAATCTTTTGGCACTGAGGGCATATTATCTGGGACCCAAGGGGGAAAAGCTTCTGGTTTTCGATTATATGCCCAGAGGAAGTCTTGCTGCTTTCCTGCACGCTCGTGGGCCAGAAACAGCCATTGATTGGCCAACAAGGATGAGAATAGCGCAAGGCATGGCTCGTGGCTTGTTCTACCTTCATTCCCATGAGAATATCATACATGGGAATCTGACATCCAGCAACGTCCTGCTGGACCAAAACACAAATGCTAAAATAGCAGATTTTGGTCTTTCTAGGTTAATGACAACCGCCGCTAGTTCTAACGTCGTTGCGGCAGCCGGAGCCTTAGGCTACCGAGCGCCGGAGCTCTCAAAGCTGAAGAAAGCAAACACAAAAACTGATGTGTACAGCCTGGGTGTGATCTTGTTGGAACTCCTAACAGGGAAGTCACCAGGTGAGGCCATGAATGGGGTGGATTTGCCTCAATGGGTTGCCTCCATTGTGAAGGAAGAATGGACGAATGAGGTATTCGACGTGGAGCTCATGAGAGATGCATCTACCATTGGTGATGAGTTGTTGAACACACTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCAGCAAGTACTACACCAATTAGAAGAGATTAGACCAGAGAGACCAACCAGTTCAACCAGTGATTAG 2589 0.4616 MIMGKSDILHQYNPSQVSQLGMRNAADWHYILDKKREKWKNSRKTQSPFQWFPWFFCLWILLLSIRVKPVLGEGDRWDGVVVTESNFLALQAFKQELIDPKGFLRSWNDSGFTTCSGGWVGIKCAQGQVIVIQLPWKGLRGHITERIGQLEGLRKLSLHDNQIGGSIPSSLGLLPNLRGVQLFNNRLEGSIPPSLGSCLLLQSLDLSNNLLTGRIPDSLFNSSKLYWLNLSFNSFSGSIPATLSRSPSLTFVSLQHNNLSGPIPNSWGGALKNDFFRLQNLILDHNSFSGTIPASFGSLAELREISLSHNQLSGVIPNEIGSLSRLTTLDFSNNALNGSLPASLSKLSSLTVLNVENNHLDDQIPESLGRLRNLSVLSLRGNQLNGHIPESVGNVSSLKQIDLSLNNLSGEIPSSFNNLRSLNFFNVSYNNLSGPVPSLLAQKFNSSSFLGNIQLCGYDPSIPCPSPAPSGIVSAPSSEASKHHHRRKLHIKDIILIAAGALLVLLVIICGILIFFLIRRRAASKAEKKASAGTSGTGKGVAAAAAAAAAAGEAEAGGEAGGKLVHFDGPTAFTADDLLCATAEIMGKSTYGTVYKATLEDGSEVAVKRLREKITKGQREFESEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLAAFLHARGPETAIDWPTRMRIAQGMARGLFYLHSHENIIHGNLTSSNVLLDQNTNAKIADFGLSRLMTTAASSNVVAAAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLHQLEEIRPERPTSSTSD 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2979g00003 862 FunFam Pollen receptor-like kinase 1 657 862 - -
Pral2979g00003 862 Pfam Leucine rich repeat N-terminal domain 88 124 IPR013210 -
Pral2979g00003 862 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 285 851 - -
Pral2979g00003 862 CDD TM_EGFR-like 494 521 - -
Pral2979g00003 862 CDD STKc_IRAK 586 851 - -
Pral2979g00003 862 Pfam Protein tyrosine and serine/threonine kinase 583 848 IPR001245 GO:0004672|GO:0006468
Pral2979g00003 862 Gene3D Phosphorylase Kinase; domain 1 586 657 - -
Pral2979g00003 862 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 83 272 - -
Pral2979g00003 862 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 467 - -
Pral2979g00003 862 ProSiteProfiles Protein kinase domain profile. 580 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2979g00003 862 SMART LRR_typ_2 299 322 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 201 222 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 150 173 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 323 346 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 174 198 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 371 395 IPR003591 -
Pral2979g00003 862 SMART LRR_typ_2 347 370 IPR003591 -
Pral2979g00003 862 FunFam Leucine-rich repeat receptor-like protein kinase 566 656 - -
Pral2979g00003 862 Gene3D Ribonuclease Inhibitor 86 239 IPR032675 -
Pral2979g00003 862 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
Pral2979g00003 862 Pfam Leucine rich repeat 372 432 IPR001611 GO:0005515
Pral2979g00003 862 Pfam Leucine rich repeat 201 259 IPR001611 GO:0005515
Pral2979g00003 862 SUPERFAMILY Protein kinase-like (PK-like) 584 854 IPR011009 -
Pral2979g00003 862 SUPERFAMILY L domain-like 119 459 - -
Pral2979g00003 862 Gene3D Transferase(Phosphotransferase) domain 1 658 861 - -
Pral2979g00003 862 Gene3D Ribonuclease Inhibitor 340 466 IPR032675 -
Pral2979g00003 862 Gene3D Ribonuclease Inhibitor 240 339 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2979g00003 Pral-Chr2979 13105 16163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2979g00003 77 853 Receptor kinase-like Gene Family AT3G51740 65.096 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pral2979g00003 PK_Tyr_Ser-Thr 6.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2979g00003 - - aprc:113851294 1216.06