Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2978g00006 ATGAGAAGCATTTCTCAATTTCCCTATAAAACTCTCCTTTTCATTAGCTTTCTGATCTGTACATATTATAAACTTGAAAAAAAAAAAAAAAAAGATGATATGGAAGACTCTGGCGTGTTCAGGTTCGACATTAGCGGTGCTTTCCTTGATGAGACAACACAAACTTTCAACACAGCATATTGTGGTAATCAGACTGAAGATGACGATGGAGCCACAAGATTCACATCAGTTGCACAACAGTTGCTGATGAATCTTCAAACAGTAACACCAAATATCAGAGGATCTTCTGCAGCCATGAAGATGACAGTGTCTAACGTTGGTCCAACTATTTATGCCTTTGCCCAATGTATTGAAACCATATCACAAAATGAGTGCCTCAGTTGCTTGAATGCTGGATACAACAATATAAAGACTTGTCTTTCCTACTCAGATGGTAGGGCTTTTGCCGATGGGTGTTTCATGAGATACTCCACAACTTCCTTTTTTCCTGATAACCAGACTATTGATATCGTACCTGCCTTCAAACAAGGTTCAAGTAACAAGGGGGCCATTGCTGCTGGAGTTGTTTCAGGTGCTGCTCTTGCTTTGCTCCTCGTTGCATTATTTGCTTGGATGAGACGAACTAAAAGCCCAAAGAGGGTTCCTAGAGGAGAGATACCTGGAGCGAGTGAAAGGAAAGGTTCTCTCAATTGGAAGCAACGATATGAAGTGATTTTAGGAATAGCAAGAGGCTTGACTTATCTTCATGAGGAATTTCATATTCGCATTATTCATAGAGATATAAAGACAAATAACATTCTGTTAGATGATGATCTACAACCACGAATTGCTGATTTTGGGTTGGCAAGGCTTATACCTGAGAATAGAACTCATCTTAGTACAAAATTTGCAGGAACATTAGGATACACTGCACCAGAGTATGCAATTCATGGACAACTATCTGAAAAGGCTGATATTTATAGTTATGGTATTGTTGTCTTAGAAATCATTAGCGGCCAAAAAAGCAATGAATTGAAAGTTGATGGTGATGCTGAAGGCGAATTCCTCCTCCAAAAAGCTTGGAAACTTTATGAGAGAGGCATGCATTTAGAGTTGGTGGACAATGCCTTAGACAGTAATGATTATGATGCAGAAGAAGTGAAGAAAATTATAGAAATTGGTTTGCTATGCACTCAAGCATCTGCAGAAATAAGACCGGCAATATCTGAAATAGTGGTTTTGCTTCAGAACAAGGGTTTATTAGAGAATATGAGGCCGACTATGCCTATCTTGATTGAACCTAATTAG 1287 0.3877 MRSISQFPYKTLLFISFLICTYYKLEKKKKKDDMEDSGVFRFDISGAFLDETTQTFNTAYCGNQTEDDDGATRFTSVAQQLLMNLQTVTPNIRGSSAAMKMTVSNVGPTIYAFAQCIETISQNECLSCLNAGYNNIKTCLSYSDGRAFADGCFMRYSTTSFFPDNQTIDIVPAFKQGSSNKGAIAAGVVSGAALALLLVALFAWMRRTKSPKRVPRGEIPGASERKGSLNWKQRYEVILGIARGLTYLHEEFHIRIIHRDIKTNNILLDDDLQPRIADFGLARLIPENRTHLSTKFAGTLGYTAPEYAIHGQLSEKADIYSYGIVVLEIISGQKSNELKVDGDAEGEFLLQKAWKLYERGMHLELVDNALDSNDYDAEEVKKIIEIGLLCTQASAEIRPAISEIVVLLQNKGLLENMRPTMPILIEPN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2978g00006 428 Gene3D Transferase(Phosphotransferase) domain 1 221 417 - -
Pral2978g00006 428 Pfam Salt stress response/antifungal 61 158 IPR002902 -
Pral2978g00006 428 ProSiteProfiles Gnk2-homologous domain profile. 55 161 IPR002902 -
Pral2978g00006 428 Gene3D - 53 161 IPR038408 -
Pral2978g00006 428 FunFam Cysteine-rich receptor-like protein kinase 2 220 416 - -
Pral2978g00006 428 ProSiteProfiles Protein kinase domain profile. 63 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2978g00006 428 SUPERFAMILY Protein kinase-like (PK-like) 224 408 IPR011009 -
Pral2978g00006 428 SMART serkin_6 111 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2978g00006 428 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 228 426 - -
Pral2978g00006 428 Pfam Protein kinase domain 220 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2978g00006 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Pral2978g00006 428 FunFam Cysteine-rich receptor-like protein kinase 2 56 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2978g00006 Pral-Chr2978 56532 59838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2978g00006 214 409 Receptor kinase-like Gene Family AT1G56120 48.241 6.45e-60 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral2978g00006 Pkinase 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2978g00006 - - sita:101785519 350.903