Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2978g00004 ATGCAGCCTCAGCTACCGCAACAAAAGCCTCTGTTCTTCTTCTTATTGAGCTTCATAATCTGGTCATGGTGGACTCTTAACGACGTCGTTTCGGACCCTCAGACGAATCTAGTGCGACTATGGTGTGACCCCCAAGACGGTGACAACGATGGGTCCATCATGAAGGAGATCCTGAACGAAACGTTTGGAGATCTGAGATCTCAGATCCAAAACCAAAACAAACACTTCGCCATAGCTCAATCAGTGAAGGCTAACATCCCCGTTTATGGCCTTTTTCAGTGCAGAAACTACCTCTCCGTTGCCGATTGCCTCGCTTGCTTTGACGTCGCCGCCGTAAACATCCGCAACTGCTCCGCCAGGGCATACGCTGCTCGTCTTGTCTACGACGGCTGCTTCCTCAGGTATGAGAGCAGTCAAAGCTTCGACTGGGCCAGCGATAGTTGGAACAACATAGTATGTGGGAATCAGACAATAAAAGATTCGCCTGCTCTTGCTTCAACTGTGCAACAAGTGCTAAGGAATCTAGGCATAGCAACCCCAAGAATCCCTGGTTCCTATGTGGCCACTAAGACGCCTGTCCCTAACAGTAATGATCTGAATATTTATGGCTTGGCTCAATGTGTTGACACTGTCCTACAAAATGGGTGCCGGACTTGTATTAACATTGCTTTAAGACACTTTCAGAATTGCCTTACCAACACAGATGCCAAGAGTTACGATATTGGCTGTTTCGTGAGATACTCCACCACTGCCTTCTTTGCTCTTAATCAAACCATTGATATCAACCCCTTCTTGAAACAAGGTTCAAGCAATAAAGGGGCCATCATTGGCATTGTTATTGGATGTTTAGTGCTTTTCTTTGTCTTCCTTATTGCATTATTTGCCTGGATTAGATCACGAAAAAGCCAAAAGAAGGTTCCCAGAGGAGATATTACTGGAATTAGCGTGTTGAAAGCCCAGGTTAATTACAATTATGGAGATTTGAAGTCTGCAACGAAAAATTTCAGCATTGAAAATAAACTTGGAGAAGGTGGATTTGGTGCAGTATATAAGGGCACTTTGAAGAATGGAAAAGTAGTTGCAGTGAAGAAATTAACTTTACGACAATCGAAGAGGGTAGAAGAAGAGTTTGAGAGTGAAGTGAAACTTATAAGTAACGTTCATCATCGGAATCTTGTCCGGCTGCTTGGATGTTGCAGTAAAGGCAATCAGAGAATTCTGGTCTATGAATACATGAAAAAGACCAGTCTTGACAGATTTTTATTTGGAAAAAATAAAGGTTCTCTTAATTGGAAGCAACGATACGATATAATTTTAGGAACAGCAAGAGGTTTGGTTTATTTACATGAAGAATTTCATGTTCGTATCATACATAGAGACATAAAGACTAACAACATCCTCTTGGATGATGATTTACAACCTAAAATTGCTGATTTTGGCTTAGCAAGACTCTTACCTGAGGACAAGACTCATCTTAACACAAGATTTGCGGGAACATTAGGATATACAGCTCCAGAATATGCAATTCATGGACAACTATCAGAAAAGGTTGATGTATATAGCTATGGTGTTATAATTTTAGAAATTATTAGTGGTCAAAGAAACAATGAATTGAATGCCAATGGTGCTGCTGAAGGCGAATTCCTCCTTCAAAAAGCTTGGAACTTATACAAGAGAGGCATACATTTAGAACTGGTGGACGAGACCTTAGACGCTAATGATTATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGGTTTACTTTGCACACAAGCATCTGTAGATATAAGGCCAAAGATGTCTGAAGTAGTTGCATTGCTCCAACAAAAGGGTTTATCAGAGGATATGAGACCCACTATGCCTATTTTGATTGAAATTGGTTAA 1887 0.4102 MQPQLPQQKPLFFFLLSFIIWSWWTLNDVVSDPQTNLVRLWCDPQDGDNDGSIMKEILNETFGDLRSQIQNQNKHFAIAQSVKANIPVYGLFQCRNYLSVADCLACFDVAAVNIRNCSARAYAARLVYDGCFLRYESSQSFDWASDSWNNIVCGNQTIKDSPALASTVQQVLRNLGIATPRIPGSYVATKTPVPNSNDLNIYGLAQCVDTVLQNGCRTCINIALRHFQNCLTNTDAKSYDIGCFVRYSTTAFFALNQTIDINPFLKQGSSNKGAIIGIVIGCLVLFFVFLIALFAWIRSRKSQKKVPRGDITGISVLKAQVNYNYGDLKSATKNFSIENKLGEGGFGAVYKGTLKNGKVVAVKKLTLRQSKRVEEEFESEVKLISNVHHRNLVRLLGCCSKGNQRILVYEYMKKTSLDRFLFGKNKGSLNWKQRYDIILGTARGLVYLHEEFHVRIIHRDIKTNNILLDDDLQPKIADFGLARLLPEDKTHLNTRFAGTLGYTAPEYAIHGQLSEKVDVYSYGVIILEIISGQRNNELNANGAAEGEFLLQKAWNLYKRGIHLELVDETLDANDYDAEEVKKIIEIGLLCTQASVDIRPKMSEVVALLQQKGLSEDMRPTMPILIEIG 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2978g00004 628 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Pral2978g00004 628 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 623 - -
Pral2978g00004 628 CDD STKc_IRAK 341 610 - -
Pral2978g00004 628 SMART serkin_6 335 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2978g00004 628 ProSiteProfiles Gnk2-homologous domain profile. 146 252 IPR002902 -
Pral2978g00004 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Pral2978g00004 628 FunFam Cysteine-rich receptor-like protein kinase 2 412 616 - -
Pral2978g00004 628 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Pral2978g00004 628 CDD TM_EGFR-like 274 305 - -
Pral2978g00004 628 Gene3D Transferase(Phosphotransferase) domain 1 412 619 - -
Pral2978g00004 628 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Pral2978g00004 628 Gene3D - 146 252 IPR038408 -
Pral2978g00004 628 Gene3D - 36 140 IPR038408 -
Pral2978g00004 628 Pfam Salt stress response/antifungal 159 249 IPR002902 -
Pral2978g00004 628 Pfam Salt stress response/antifungal 55 137 IPR002902 -
Pral2978g00004 628 Pfam Protein kinase domain 336 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2978g00004 628 SUPERFAMILY Protein kinase-like (PK-like) 319 609 IPR011009 -
Pral2978g00004 628 FunFam Cysteine-rich receptor-like protein kinase 2 300 411 - -
Pral2978g00004 628 ProSiteProfiles Protein kinase domain profile. 335 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2978g00004 Pral-Chr2978 18204 42396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2978g00004 5 611 Receptor kinase-like Gene Family AT1G70520 37.842 8.03e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral2978g00004 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2978g00004 - - gmx:100813585 761.525