LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2978g00003	ATGCTGCCTCACATGCGACAAAAACCCTTCTTCTTCTTCTTCTTCTTGTTGAGCTTCACAATCTGGTCATGGTGGACTCTGGATGGCGTCGTTTCAGACCCTCAGACGACTCTGGTGACGATAGGGTGCAGCCAAATCAACGTCAGCGACGTGTCCATCTTCCAAGGCAACCTAAACGCAACGTTTCAAAGCATGAGAACGCAGATCAGCAACCAGAGCGAACACTTCGCCACGGAGCAAGTAGTGAAGGGTAACAACCCCGCTTATGGCCTTTTTCAGTGCAGAAACTACCTCTCCATCGCCGACTGTCTCTCTTGCTTTGACTTCGCCGCCGATAAGATCCGACGCAACTGCTCCGCCGCCTCCAACGGTGCCCACATCACATACGACGGCTGCTTCCTCAGGTACGAGAGCAGTAGCTTCTTTGACCAGTCAACAGACGCAGGCAACAACATTAATTGTGGGAATGAAACAAGAAACTCAACTGAACTTGCTTCAACTGTGCAACAAGTTCTGAGGAATCTGGAAATAGCCACACCGAGAATCAATGGTTACTTTGCAGCCACCAAAACCACAGTACCTAACAGTAACGGCTCAAACATTTATGCCTTTGCTCAATGTGTTGAGACACTCACACAAAGTGGCTGCGACAATTGCTTGAACATTGCCTTAAGAAATTTTCAGATTTGCCTCCCAAACTCAAATGCTAAGACTTTCGATTTCGGGTGCTTCATGAGATACTCCACCACTTCCTTCTTTGCTGATAATCAAACCACTAACATCAATCACTTCTTGAAACAAGGAGATTCAAGCAAGAAGAAGGCCATTATTATTGGTGGAGTCGCTGGAGGAACATGTTTTATTTTGATTATGATAGCATTATTTGCTTTGTATATGCGATCAAAGTCATCGAAGATGGTTCCTAAAGGTGATATTTTGGGAGCGACTGAGTTAAAAGGCCCTGTTAATTATAGGTATAAAGATCTAAAGTCAGCGACAAAAAATTTCAGTGAAAAAAATAAACTAGGAGAACAAGCCTTTGGCGGCTTATACAAGGGTATTTTGAAAAATGGAAAGGTAGTTGCTATCAAGAAATTGCATTTAAGCCAATCCAAAGAGATGGAGAAAGATTTTGAGAGTGAAGTGAAGTTGATAAGTAATATTCATCATCGAAATATCGTTCGACTCCTGGGATGTTGCAATAAAGGCCAAGAGAGACTTCTTGTTTATGAGTACATGAAAAACAGCAATGTTGGCCAATTCTTATTTGGTGAGACTAAAGGTTCTCTGAGTTGGATGCAACGTTATGCAATAATTTTTGGCACTGCAAGAGGTTTGGCATATTTACATGAGGAATTCCATGTTTGTGTTATACATAGAGATATAAAAGCTAGCAACATCCTCTTGGATGATGATTTTCAACCTAAAATTGCTGATTTTGGACTAGCAAGGCTTCTTCCAAGAGACCAATCTCATCTTCACACAAATTTTGTTGGAACAATGGGATATGTGGCACCTGAATATGCAATGCATGGGCAATTATCAGAAAAGGTTGATACTTATAGCTATGGTGTTGTAGTCTTAGAAATCATAAGTGGACAAAAAAGTAGTGCATTGAAGGTTGATGATGAAAGTGAATACCTCCTCCAAAGAGCTTGGAAACTATATGAGAGAGGAATGCATATATCGTTTGTGGATAAAACCTTAGACCCAAATGAGTATGATGCGGAAGAAGTAAAGAAAATAATAGAAATTGGGCTGCTTTGCACACAAGCATCTCCTGCAGCAAGGCCAAGAATGTCTGAAATTGTTAGAATGCTCAAAAGAAAGAGCTTAATGGAGCACAAAGAGCCAACTATGCCTGTCTATGTTGATCCTACTTCTTGGCCCAAAAGAGACGCTTCTATGACTCACAGTTCATCTTCATCAAATGCTGTTATCTCTACTTCCATTTTATCAGGAAGGTGA	1968	0.4136	MLPHMRQKPFFFFFFLLSFTIWSWWTLDGVVSDPQTTLVTIGCSQINVSDVSIFQGNLNATFQSMRTQISNQSEHFATEQVVKGNNPAYGLFQCRNYLSIADCLSCFDFAADKIRRNCSAASNGAHITYDGCFLRYESSSFFDQSTDAGNNINCGNETRNSTELASTVQQVLRNLEIATPRINGYFAATKTTVPNSNGSNIYAFAQCVETLTQSGCDNCLNIALRNFQICLPNSNAKTFDFGCFMRYSTTSFFADNQTTNINHFLKQGDSSKKKAIIIGGVAGGTCFILIMIALFALYMRSKSSKMVPKGDILGATELKGPVNYRYKDLKSATKNFSEKNKLGEQAFGGLYKGILKNGKVVAIKKLHLSQSKEMEKDFESEVKLISNIHHRNIVRLLGCCNKGQERLLVYEYMKNSNVGQFLFGETKGSLSWMQRYAIIFGTARGLAYLHEEFHVCVIHRDIKASNILLDDDFQPKIADFGLARLLPRDQSHLHTNFVGTMGYVAPEYAMHGQLSEKVDTYSYGVVVLEIISGQKSSALKVDDESEYLLQRAWKLYERGMHISFVDKTLDPNEYDAEEVKKIIEIGLLCTQASPAARPRMSEIVRMLKRKSLMEHKEPTMPVYVDPTSWPKRDASMTHSSSSSNAVISTSILSGR	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2978g00003	655	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	640	-	-
	Pral2978g00003	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Pral2978g00003	655	SMART	serkin_6	336	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2978g00003	655	CDD	STKc_IRAK	342	609	-	-
	Pral2978g00003	655	Gene3D	Transferase(Phosphotransferase) domain 1	413	622	-	-
	Pral2978g00003	655	Gene3D	Phosphorylase Kinase; domain 1	301	412	-	-
	Pral2978g00003	655	Pfam	Protein kinase domain	336	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2978g00003	655	FunFam	Cysteine-rich receptor-like protein kinase 2	149	252	-	-
	Pral2978g00003	655	ProSiteProfiles	Gnk2-homologous domain profile.	36	141	IPR002902	-
	Pral2978g00003	655	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Pral2978g00003	655	FunFam	Cysteine-rich receptor-like protein kinase 2	413	615	-	-
	Pral2978g00003	655	FunFam	Cysteine-rich receptor-like protein kinase 2	301	412	-	-
	Pral2978g00003	655	ProSiteProfiles	Protein kinase domain profile.	336	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2978g00003	655	SUPERFAMILY	Protein kinase-like (PK-like)	321	640	IPR011009	-
	Pral2978g00003	655	Gene3D	-	148	252	IPR038408	-
	Pral2978g00003	655	Gene3D	-	35	141	IPR038408	-
	Pral2978g00003	655	Pfam	Salt stress response/antifungal	46	138	IPR002902	-
	Pral2978g00003	655	Pfam	Salt stress response/antifungal	159	249	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2978g00003	Pral-Chr2978	11616	16020	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2978g00003	5	655	Receptor kinase-like Gene Family	AT1G70520	35.928	1.89e-130	397

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral2978g00003		Pkinase	1.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2978g00003	-		-	gmx:100813585	823.157