Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2975g00001 ATGACTCGTTACTCCAATCACGACCATCGTCGTCTTCTCTCTTCTCCTGCTGTATTCCCTTGCCGAGACGTCTCTCCCTCCACTCTTCTCACATCTTTGATCTCTCTCTCCCTCGATATCTGTAATTTTCAATCCAGGTTCTTCCCCACGCAGAAGCGCAATGCCAGGGAAATCATACGCCAGGTTAGTATTATCCTCATATTCCTCCAGGAACTTGCTGAAATCCCCAAACAATCCCCTGTTCTCTGCTTCTCCGAGCTCCACTTTAGTTTCCAGAAGATATTGTTCTTGCTTCAAGACTGCACTCGTGACGGTGCCAGATTATGGATGCTAATGAAATCCCAATACGTTGCCTCCGAATTTCGGGTTCTGATTCGTGGGGTTGCCACTGCTCTTGACGTATTGCCTCTTCATTGGATGAAGGTTTGTGGTGAAGTGAAGGAATTGGTGGAACTCGTAGCCAACCAAGCTCGGAAAGTGAAGTTCGAAGTCCCCCGTGACGATGAAGAGAACTCAAAACGAGTTCGTTCAATCTTGCGTCAGTTTGAGAAGGGAGTCGAACCTGACGTAGCAGATATGAAGCCAGTCTTAGATTATCTAGAGATAAAGACTTGGGCTGACTGTAACAATGAGATCGAATTCTTCCTAGATGAAATGCATTTCCAGCGCTCTGAATGCGACGAGCGTGAGGTTCCCCTTCTGAGTGGTTTGATCGGATTCTTGAGCTATTGCAGGGGAGTGATATTCGAAACTCATGATTGTCGCAAACACACAGATTTCTCAGAAGGAACGTATAGTTCAGAGATGATTAAATGTATGAACCCAGAGGATTTTCGATGCCCAATTTCGCTTGAGCTGATGATGGACCCAGTAACTGTATCAACAGGTCAGACCTACGACCGAACTTCCATACAACAATGGCTCAAATCTGGAAACAAAATCTGCCCCAAAACAGGGGCAAAGCTGAAGAACACAGACTTAATCCCAAACACAGCGCTCCGAAAGCTTATACAGCAATTATGCGTCGCCAAAGGCGTTTCCCTGACCAAATTAAACAATCAAAGTTGCGATATAGCGAAGACCATCGTGCCGGGAAGCCCCGCAGCAGCCCACGCCACTCAATTTCTCTCCTGGTTTCTTGCTCGAAGACTCGTTTTTGGAACAATGGAGGAGAAGAACAAAGCAGCATACGAGATTCGTTTGCTCGCAAGGTCCAACATTTTCAACCGGTCGTGTCTGATCCAAGTGGGGACAGTGTCCCCTCTGCTCCTCCTTTTGTCAACGAGAGACAACTCCACGCAAGAGAACTCCATTGCCGCTCTGTTGAAGCTGTCAAAGCATAACAAAGGCAAAGAAGCCATAATTGAGAATGGAGGCCTAAAGTCAATTGTCACGGTTCTCAAGAAAGGATTAAGCCCAGAATCACGCCAAATCGCAGCTGCCATCATATTCTATCTTGCTTCTGTGAAACAACACAGAAAATCAATAGGAGAAAACCCAGAGGTAATTCCTTGTCTAGTTGAACTGATGAAGGAAGGAACAACGTGCGGGAAGAAGCATGCCATGGTCGCTATCTTCGGGCTTCTCTTAAACACGAGTAATCATAAAAGAGTAATTGAAGCCAATACTGTTCAGGTGCTTGTGGATATGCTGACTTCCTCAGAGAAGGATGATGTAGCGACAGATTCGTTAACAGTTCTTGGGGCTTTAGCAGAGAACAGTGAAGGAGCCGAAGCCATGATGAAGGCGTCGGCCCTGCCTCAGATCATAGGGATACTGAAATCAACAGGGAAGAATTCAGGGAAAGAGCACTGCGTTTCGATTCTGCTATCGCTGTGCGTGAATGGAGGAGAAGATGTGATAGGGGTAATGGCGAAAGACCCATCGATAATGGCTTCATTGTATTCGCTTCTCACGGACGGGACTAGTCGTGCTACAAAGAAAGCTCGCTTCCTCATCAGGATTTTACACGAATTTAACGAAAAACCAATCTGTTCGGTTGCTGAACAACAGACTCTTGAAGTTATTGATTTGTTAGGTAGAAATTGA 2049 0.4602 MTRYSNHDHRRLLSSPAVFPCRDVSPSTLLTSLISLSLDICNFQSRFFPTQKRNAREIIRQVSIILIFLQELAEIPKQSPVLCFSELHFSFQKILFLLQDCTRDGARLWMLMKSQYVASEFRVLIRGVATALDVLPLHWMKVCGEVKELVELVANQARKVKFEVPRDDEENSKRVRSILRQFEKGVEPDVADMKPVLDYLEIKTWADCNNEIEFFLDEMHFQRSECDEREVPLLSGLIGFLSYCRGVIFETHDCRKHTDFSEGTYSSEMIKCMNPEDFRCPISLELMMDPVTVSTGQTYDRTSIQQWLKSGNKICPKTGAKLKNTDLIPNTALRKLIQQLCVAKGVSLTKLNNQSCDIAKTIVPGSPAAAHATQFLSWFLARRLVFGTMEEKNKAAYEIRLLARSNIFNRSCLIQVGTVSPLLLLLSTRDNSTQENSIAALLKLSKHNKGKEAIIENGGLKSIVTVLKKGLSPESRQIAAAIIFYLASVKQHRKSIGENPEVIPCLVELMKEGTTCGKKHAMVAIFGLLLNTSNHKRVIEANTVQVLVDMLTSSEKDDVATDSLTVLGALAENSEGAEAMMKASALPQIIGILKSTGKNSGKEHCVSILLSLCVNGGEDVIGVMAKDPSIMASLYSLLTDGTSRATKKARFLIRILHEFNEKPICSVAEQQTLEVIDLLGRN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2975g00001 682 SMART arm_5 531 572 IPR000225 GO:0005515
Pral2975g00001 682 SMART arm_5 573 614 IPR000225 GO:0005515
Pral2975g00001 682 SMART arm_5 405 446 IPR000225 GO:0005515
Pral2975g00001 682 SMART arm_5 447 488 IPR000225 GO:0005515
Pral2975g00001 682 CDD RING-Ubox_PUB 275 327 IPR045210 -
Pral2975g00001 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Pral2975g00001 682 PANTHER U BOX DOMAIN-CONTAINING 53 656 - -
Pral2975g00001 682 Pfam U-box domain 275 339 IPR003613 GO:0004842|GO:0016567
Pral2975g00001 682 SUPERFAMILY RING/U-box 262 347 - -
Pral2975g00001 682 FunFam RING-type E3 ubiquitin transferase 354 667 - -
Pral2975g00001 682 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Pral2975g00001 682 FunFam RING-type E3 ubiquitin transferase 274 346 - -
Pral2975g00001 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Pral2975g00001 682 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Pral2975g00001 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 585 IPR000225 GO:0005515
Pral2975g00001 682 SUPERFAMILY ARM repeat 388 659 IPR016024 -
Pral2975g00001 682 Gene3D - 369 676 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2975g00001 Pral-Chr2975 1939 4450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2975g00001 10 662 U-box Gene Family AT1G60190 40.180 8.70e-162 480