Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2972g00001 TTTTCTTCTGACGCCATAACCATTGGCAAACCCATTAACGACAATGGAGAGCTTGTCATTTCTAAAGGAAGAAAATTTGCTCTTGGCTTCTTCTCTCCAGGCAAATCTGCCTTTCGCTTTGTTGGAATCTGGTACTATAACTTGCCAAAGCAAACTGTTGTTTGGGTTGCCAATAGAGATAATCCCATAAATGACTCTTCTGGAGTTCTCTTCCTCAACCCAAATAATGGAAATCTCGTCCTCCGCCAGAACTCTACCAACTTGCCCATTTGGTCCTCGAATGTTTTTGTCCCTGTTCCAAGTAATACAGTTATGGCTCAGCTCACTGATTTAGGGAATCTCGTTCTGATTCAAAATAATGACTCCAAAAATGTGTTGTGGCAAAGCTTTGATCATCTCACTGACACCCTTCTTCCTTATGCCAAACTGGGCTTCAACAAAAGAACTGGTCAGAACTGGTTGTTGCAGTCATGGAAGACAGAAGATGATCCAGGAACAGGAAGTATCTCACTGAGGTTCAACACATCTGGGAAAGATCAAGTTTTTCTATACAATAAAAAAGTTCCATTGTGGCGAGGTGGGTTCTTCAATGGCGAAATATTTGTGGGTGTGCCATCTATGAGAAGAGAAATGTCATATGCTTTCAATTTCATTATCACAGACGATGATAATTCCGCCGGATTCACATATCACGCCGTCGATCCCACCGCCATCTTCCGGATCTCAGTTGTTCCGACGGGATACAAGCAAACACATAAATGGGATCATGATATAAATGATTGGAAGCCATATGGGTCATACCCAGAAACCAACTGTGAAACCTATGGAACTTGTGGAGCCAATAGCAAGTGTGATTCTTCCAACTATGATTACAACAAGTGTTTTTGCCTACCGGGGTTTGAACCTAGTAACCCTAATGAGTGGTACATGAACGATGAATCAGCTGGTTGTGTGAGGAAGAAAGGACCATCTTTGTGTGGGAATAATGGAGAAGGCTTCATTAAAGTAGACGGTGTGAAGATTCCAGATACTTCCATAGCCAATTTTCAGAAAGGTTTGAGAATGGAGGATTGTGAACAAGAGTGCTTGAGAAATTGTTCTTGTAATGGCTATGCGGCTTCAGATGTGAGAAATGGAGGAAGTGGGTGCTTGACTTGGCATGGAGATTTGCTGGACACCATGGTATTAAGTGAAGAAGGCCATAATTTATATGTTCGTGTTGATGCTGTTGAACTTGCAAATTATGCCAAGAAATCAAAAGGAACGCTTCCAAAAGAACAAATGAAAGTAGACTCTCCAACAGAAGAGCAGTACCATGATGAAAATAGAGCACAACCAAGCTTACCATGTTTCAGCATTAAAACCATAATGGTTGCAACAAATAAATTCTCCAATGAGAACCGATTGGGGCAAGGTGGATTTGGTTCTGTATACAAGGGCTCATTATTTAATGGACAAGAAATAGCAGTGAAAAGATTGTCTCAAAGTTCTAGACAAGGAACTCAAGAGTTCAAGAATGAAATTAAAGTGATTGGAAGATTACAACACAGGAATCTTGTAAAGTTGCTTGGTTATTGCATTCATAAGAAAGAAAGGATGCTGATATATGAATACCTACCCAACAAAAGCTTGGACTTCTTTCTCTTTGATAGGGATAGAAGATCATCACTAGATTGGGATACATGTTTTCACATCATCATTGGAATTGCTCGAGGCATTCTCTATCTTCATCAAGATTCAAGGTTGAAAATAATCCATAGAGATCTTAAAGCTAGCAATGTCCTTTTAGACCTCGCAATGAATCCCAAAATTTCAGATTTTGGAATGGCTAAAATATTTGGAGAGGATCAAATCCAAGCAAATACAAAACGAATTGTTGGGACATATGGCTATATGTCTCCAGAATATGCAATGGAAGGACAATATTCAACAAAGTCTGATGTTTTCAGCTTTGGGATTCTATTGATAGAGATTATTTGTGGAAAAAGAAATACAGATCACGATAAAGAAAGATCATCTGTAAATTTAATTGGACATGTATGGGAGATGTGGAGAGAAGAAAAATCCTTGGACATAGTGGATCCAATACTTGGTGAAGCATATCCAATTGACTTAGCCCGAAGATGTATACATATTGGGCTGTTGTGTGTGCAAGAAAATGCCTCCTATAGGCCTTCCATGTCAGAAGTAATCTACATGCTTGGCAATGAAGTGTCCCTCCCCTCACCTCGAAGACCTGCATTCCTATTCAATTCGAATGCAGAGCTTTCAGAATCTTCAACATCTAAAGATCCTTCTGTAAACGAAATTACTGGTACGACAATCAGTGCTAGATAA 2337 0.3962 FSSDAITIGKPINDNGELVISKGRKFALGFFSPGKSAFRFVGIWYYNLPKQTVVWVANRDNPINDSSGVLFLNPNNGNLVLRQNSTNLPIWSSNVFVPVPSNTVMAQLTDLGNLVLIQNNDSKNVLWQSFDHLTDTLLPYAKLGFNKRTGQNWLLQSWKTEDDPGTGSISLRFNTSGKDQVFLYNKKVPLWRGGFFNGEIFVGVPSMRREMSYAFNFIITDDDNSAGFTYHAVDPTAIFRISVVPTGYKQTHKWDHDINDWKPYGSYPETNCETYGTCGANSKCDSSNYDYNKCFCLPGFEPSNPNEWYMNDESAGCVRKKGPSLCGNNGEGFIKVDGVKIPDTSIANFQKGLRMEDCEQECLRNCSCNGYAASDVRNGGSGCLTWHGDLLDTMVLSEEGHNLYVRVDAVELANYAKKSKGTLPKEQMKVDSPTEEQYHDENRAQPSLPCFSIKTIMVATNKFSNENRLGQGGFGSVYKGSLFNGQEIAVKRLSQSSRQGTQEFKNEIKVIGRLQHRNLVKLLGYCIHKKERMLIYEYLPNKSLDFFLFDRDRRSSLDWDTCFHIIIGIARGILYLHQDSRLKIIHRDLKASNVLLDLAMNPKISDFGMAKIFGEDQIQANTKRIVGTYGYMSPEYAMEGQYSTKSDVFSFGILLIEIICGKRNTDHDKERSSVNLIGHVWEMWREEKSLDIVDPILGEAYPIDLARRCIHIGLLCVQENASYRPSMSEVIYMLGNEVSLPSPRRPAFLFNSNAELSESSTSKDPSVNEITGTTISAR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2972g00001 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Pral2972g00001 778 CDD PAN_AP_plant 323 407 - -
Pral2972g00001 778 CDD B_lectin 11 132 IPR001480 -
Pral2972g00001 778 SMART ntp_6 328 407 IPR003609 -
Pral2972g00001 778 Pfam S-locus glycoprotein domain 191 303 IPR000858 GO:0048544
Pral2972g00001 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 53 164 IPR036426 -
Pral2972g00001 778 SMART serkin_6 463 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2972g00001 778 CDD STKc_IRAK 469 734 - -
Pral2972g00001 778 FunFam Liguleless narrow1 539 741 - -
Pral2972g00001 778 ProSiteProfiles Protein kinase domain profile. 463 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2972g00001 778 ProSiteProfiles Bulb-type lectin domain profile. 3 129 IPR001480 -
Pral2972g00001 778 ProSiteProfiles PAN/Apple domain profile. 326 408 IPR003609 -
Pral2972g00001 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 428 538 - -
Pral2972g00001 778 Gene3D Phosphorylase Kinase; domain 1 425 538 - -
Pral2972g00001 778 PIRSF SRK 1 431 IPR024171 GO:0004674
Pral2972g00001 778 PIRSF SRK 414 778 IPR024171 GO:0004674
Pral2972g00001 778 Gene3D Transferase(Phosphotransferase) domain 1 539 740 - -
Pral2972g00001 778 Pfam D-mannose binding lectin 52 159 IPR001480 -
Pral2972g00001 778 MobiDBLite consensus disorder prediction 757 778 - -
Pral2972g00001 778 Gene3D - 2 131 IPR036426 -
Pral2972g00001 778 SMART blect_4 9 133 IPR001480 -
Pral2972g00001 778 Pfam PAN-like domain 326 393 IPR003609 -
Pral2972g00001 778 Pfam Protein tyrosine and serine/threonine kinase 466 731 IPR001245 GO:0004672|GO:0006468
Pral2972g00001 778 MobiDBLite consensus disorder prediction 422 441 - -
Pral2972g00001 778 SUPERFAMILY Protein kinase-like (PK-like) 447 750 IPR011009 -
Pral2972g00001 778 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 726 - -
Pral2972g00001 778 Pfam Domain of unknown function (DUF3403) 736 778 IPR021820 GO:0004674
Pral2972g00001 778 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Pral2972g00001 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2972g00001 Pral-Chr2972 31513 35944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2972g00001 429 765 Receptor kinase-like Gene Family AT4G05200 55.030 4.07e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral2972g00001 PK_Tyr_Ser-Thr 7.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2972g00001 - - mtr:11429525 911.368