Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2966g00013 ATGGGAAACCTTATCTTTCATTTCTGCTTCATCTTCTTCATGATTTGCCCAGATTTATGTCAGTCCAATTTTACTTATTCCGATGAATATGCGCTTCTGGCTTTCAAATCTTCTGTTAAGGATCCTTACAATCACTTGGAAAACTGGTCCAATTCGTCATCCATGTGCAATTGGTCTGGGGTTACATGTGATGCTGAGAATGAAAGAGTGAGAATACTGAGTCTTGCAAAGATGGGTCTCAACGGAAAATTAGCCTCACAGATTGGCAATTTGTCGTTTTTAGTGAAACTTGACCTCAACAGCAACAACTTGTGTGGTAAGATGCCAAAAGAGTTGCTTCAGCTGCACAGGTTAGAAATTCTGAACTTGAGTTATAATGCATTCAGTGGAGAAATCCCAACTCGGATTGGAAGCTTATATAGGCTTCAACACTTGATTCTTGGCAATAATAGTTTTGGAGGCATCATTCCTGCAAGTATATCCAATTTGTCAAAGTTGGAGACCTTGGATTTGAATTCTAATTCCCTCCAAGGATCTATTTCCTTTGATATTGGAAGGCTTCAACATCTTAAAATTTTACGACTTCCTGTGAACAAGCTTTCAGGAATTATACCTCCAACTATTTCTAACATGTCCTCCCTTGAGCGGATCTCATTGTCTCGCAACCTTTTACAAGGCTCAATACCTATGGAAATAGGTAATCTTCAACAACTTAAGACATTATTGTTGTCTCATAACAAATTGAGCGAATCTATTCCATCAGAAATTTTCAACATCTCAAATTTGAAAGTCTTGTCCCTCCTCAACAACTCTCTATCAGGAAGTCTTCCATCAGATTTTGGATATGGCCTTTCTAATCTACAAGAGTTGTATTTGTGGGACAACAAACTCTCCGGAAGAATCCCAAATACTGTATCCAATGCTTCTAAGTTAACCATTCTAGAATTGGAGCAAAATAATTTTGATGGGGTTTTACCAAGCACACTTGGACATTTAAGATACTTAGAATCCCTTTCGGTGGATGATAACAATTTCACCATAAGAGATTATTCAAATTCTGAAACTGGCTTTTTTAGCTCGTTGTCAAACTGTAGACATTTGACGACTCTGATTCTCTCTATTAATCCTTTGAATATGAAACTTCCCAAGTCCATTGGAAACTTGTCTGATTCTCTACAAATGCTGATGATAGACTCCTGCGAGATTAACGGTAACATACCATCAGAAATTGGGAATTTGTCTAACTTGTATCACTTATCTTTGGCTGAAAATGTTTTAAGTGGATCAATTCCAGCAACAATTAGCAACTTACAGGCTCTTCAGCGTTTGACTCTTATGGACAATGAGCTAGATGGTAAGATTGTTGATGAGCTTTGTGACATTAGAAGACTTGCATATCTATATCTGTCTCGAAACAAATTTTCTGGAGCAATGCCGTGTTGCTTAGGAAATCTTATGTCCCTGCAGGAGCTTTATTTGGACTCCAATAAATTGATTGCTGAGGTACCTTCTTCCTTTTGGAATTTGACAGGTATATTGCAAGTAAACCTATCTTCCAACATGTTGGTTGGAAATCTTTCATTCAAGATTGGGAACATAAAATCTCTCACCCTATTAGATTTGTCAAGAAATCATCTTTCAGGCACCATTCCAACAACAATTAGTAGCTTGCAAAATTTGCAAATTTTCTCCTTAACACATAACAGATTGCAAGGAAAGATTCCGGAATCAGTTGGGAATTTGCTAAGCTTAGAAAAGCTAGACCTTTCCGAAAATAATTTGTCTGGTGAAATTCCTAAATCACTAGAGTCACTTACATCCCTTAAATATGTTAATCTCTCTTTTAATGAACTACAAGGCGAGATTCCTCGTGGTGGGGTCTTCAAAGATTTGTCAGCTGAATCTTTCATGATGAATAAAGCACTTTGTGGTGAGCCAAAAATGCAAGTTCCTCCATGCAGAAAAGAAAAAAGGAACAGGTCAAAGGCAAAATTGATTTTGCTGAGATGCATACTACCGGTGGTTTTGTCAACAATTTTGGTTGTTTTAGGCTTTATCCTGTTTCACCGTAAACGAATAAATTCCAGGCATACCATGAAACAAGATTTATCAACTTTAGGAATGCCAATAAGGATTTCTTATTTTGAAATTTTGGATGCAACCAACAGATTTGATGAGAGCAACTTACTGGGAAGTGGAAGTTTTGGTTCTGTATTCAAAGGAAGGCTTTCAAGTGGAATAATGGTTGCTGTCAAAATATTCAATTTTGATTCTGAAACATTGTCAAGGAGCTTTGAAGTGGAATGTGACGCAGTGCGTAATGTGCGTCATCGCAATTTGGTGAAGATCATTAGTAGTTGTTCCAATGTTGATTTCAAGTGTTTGATAATGGAGTTCATTCCCAATGGGAGTCTTGAAAAATGGTTATATTCTCATAACTATTGTTTGGATTTTCTGCAAAGGTTAAATATAATGATAAATATCGCATCTGCTTTGGAATATCTCCATCATGGCTTAACAACACCAATAGTCCACTGTGATCTGAAGCCAAGTAACATTTTGTTGGATGATAACATGGTTGCTCATTTGAGTGACTTTGGACTTGCAAAATTTTTAGATAAAGGAAAATCGAGGACACTCACAGAGACAATGCCCACAATTGGTTATGTTGCACCAGAATACGGATCTCTTGGAATTGTTTCAACAAAAGTTGATGTGTATAGTTTCGGAATAATAGTAATAGAAGTGTTCACAAGAAAAAGGCCAACAGAAGATATGTTTGTGGATGGTTTGAGCTTGAAGAGTTGGTGGGTTGACACCCCAGTTCTTGAGAAACTCCCACAGAGTTTCAGATATCAGGAAATCATATCTTGGCCGGTCATAACATTGCAGGTGGAATGGCACCTCTCTCTCTCCCTCTCTGTGTTATATTGGCCAAAACGACAGAGGTCAGAAACAGAGCATCGATAG 2970 0.3751 MGNLIFHFCFIFFMICPDLCQSNFTYSDEYALLAFKSSVKDPYNHLENWSNSSSMCNWSGVTCDAENERVRILSLAKMGLNGKLASQIGNLSFLVKLDLNSNNLCGKMPKELLQLHRLEILNLSYNAFSGEIPTRIGSLYRLQHLILGNNSFGGIIPASISNLSKLETLDLNSNSLQGSISFDIGRLQHLKILRLPVNKLSGIIPPTISNMSSLERISLSRNLLQGSIPMEIGNLQQLKTLLLSHNKLSESIPSEIFNISNLKVLSLLNNSLSGSLPSDFGYGLSNLQELYLWDNKLSGRIPNTVSNASKLTILELEQNNFDGVLPSTLGHLRYLESLSVDDNNFTIRDYSNSETGFFSSLSNCRHLTTLILSINPLNMKLPKSIGNLSDSLQMLMIDSCEINGNIPSEIGNLSNLYHLSLAENVLSGSIPATISNLQALQRLTLMDNELDGKIVDELCDIRRLAYLYLSRNKFSGAMPCCLGNLMSLQELYLDSNKLIAEVPSSFWNLTGILQVNLSSNMLVGNLSFKIGNIKSLTLLDLSRNHLSGTIPTTISSLQNLQIFSLTHNRLQGKIPESVGNLLSLEKLDLSENNLSGEIPKSLESLTSLKYVNLSFNELQGEIPRGGVFKDLSAESFMMNKALCGEPKMQVPPCRKEKRNRSKAKLILLRCILPVVLSTILVVLGFILFHRKRINSRHTMKQDLSTLGMPIRISYFEILDATNRFDESNLLGSGSFGSVFKGRLSSGIMVAVKIFNFDSETLSRSFEVECDAVRNVRHRNLVKIISSCSNVDFKCLIMEFIPNGSLEKWLYSHNYCLDFLQRLNIMINIASALEYLHHGLTTPIVHCDLKPSNILLDDNMVAHLSDFGLAKFLDKGKSRTLTETMPTIGYVAPEYGSLGIVSTKVDVYSFGIIVIEVFTRKRPTEDMFVDGLSLKSWWVDTPVLEKLPQSFRYQEIISWPVITLQVEWHLSLSLSVLYWPKRQRSETEHR 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2966g00013 989 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Pral2966g00013 989 FunFam Os07g0541700 protein 800 888 - -
Pral2966g00013 989 Pfam Leucine rich repeat 462 522 IPR001611 GO:0005515
Pral2966g00013 989 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515
Pral2966g00013 989 Pfam Leucine rich repeat 559 618 IPR001611 GO:0005515
Pral2966g00013 989 Pfam Leucine rich repeat 189 248 IPR001611 GO:0005515
Pral2966g00013 989 ProSiteProfiles Leucine-rich repeat profile. 583 606 IPR001611 GO:0005515
Pral2966g00013 989 SMART LRR_sd22_2 557 580 - -
Pral2966g00013 989 SMART LRR_sd22_2 413 439 - -
Pral2966g00013 989 SMART LRR_sd22_2 284 310 - -
Pral2966g00013 989 SMART LRR_sd22_2 485 511 - -
Pral2966g00013 989 SMART LRR_sd22_2 581 607 - -
Pral2966g00013 989 SMART LRR_sd22_2 163 184 - -
Pral2966g00013 989 SMART LRR_sd22_2 235 261 - -
Pral2966g00013 989 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 303 - -
Pral2966g00013 989 SMART serkin_6 724 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2966g00013 989 FunFam Serine-threonine protein kinase plant-type 705 799 - -
Pral2966g00013 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Pral2966g00013 989 SMART LRR_typ_2 605 630 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 139 162 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 485 508 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 235 259 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 413 437 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 581 604 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 163 187 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 533 557 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 91 115 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 284 308 IPR003591 -
Pral2966g00013 989 SMART LRR_typ_2 461 484 IPR003591 -
Pral2966g00013 989 ProSitePatterns Protein kinases ATP-binding region signature. 730 752 IPR017441 GO:0005524
Pral2966g00013 989 Gene3D Ribonuclease Inhibitor 178 281 IPR032675 -
Pral2966g00013 989 Gene3D Ribonuclease Inhibitor 282 350 IPR032675 -
Pral2966g00013 989 Gene3D Ribonuclease Inhibitor 351 662 IPR032675 -
Pral2966g00013 989 SUPERFAMILY L domain-like 49 346 - -
Pral2966g00013 989 Gene3D Phosphorylase Kinase; domain 1 708 799 - -
Pral2966g00013 989 Gene3D Transferase(Phosphotransferase) domain 1 800 972 - -
Pral2966g00013 989 PRINTS Leucine-rich repeat signature 536 549 - -
Pral2966g00013 989 PRINTS Leucine-rich repeat signature 581 594 - -
Pral2966g00013 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 183 - -
Pral2966g00013 989 SUPERFAMILY L domain-like 360 646 - -
Pral2966g00013 989 Pfam Protein kinase domain 725 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2966g00013 989 Gene3D Ribonuclease Inhibitor 25 177 IPR032675 -
Pral2966g00013 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 180 - -
Pral2966g00013 989 ProSiteProfiles Protein kinase domain profile. 724 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2966g00013 989 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 360 657 - -
Pral2966g00013 989 SUPERFAMILY Protein kinase-like (PK-like) 698 946 IPR011009 -
Pral2966g00013 989 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2966g00013 Pral-Chr2966 93737 102672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2966g00013 3 936 Receptor kinase-like Gene Family AT5G20480 38.056 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral2966g00013 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2966g00013 - K13420 qsa:O6P43_031964 899.042