Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2966g00011 ATGTCAAGTGAAGCAACACATTGGTGTTATGAGTGCAGACGGCCAATCATACTTGAAGGGAGAGATTTCACATGCCCTCATTGTGATGGAGGCTTTGTGATAGAACTTCGTGAGGTGCAAAGAACAGAACATCTGGAAGATTTTCATCAAGTACCCGATATCTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTTCCAGAAACAAGTTTTCTAGATTCAGTTGATAACATCATGAGGCACAGAATGGCTGGACGAAACCCAAACTTCGATGTGAGAAGGCGATCTATAGCTGCCATGGGTCCTGATCAGAGCTGGGGTGTTATTAGTTCTGGTCCTTACTTGATATTTCATGGCCAGGTTCCTGGATTCACTTTGACTAATGGCATCCCTAGAGGCGGTCCTAGGCGTGTTGATGTTAGTGACTACTTTATGGGGCCTGGGCTGGAAGAACTTATTGAACAACTCACTATGAATGATCGGCACGGTCCACCCCCAGCCTCGCGTTCTTCAATTGATGCAATGCCTACAATAACAATCACACAGGCTCATCTTCGTTCTGACTCTCACTGTCCGGTTTGTCAAGACAAATTTGAACTTGGTTCTGAGGCAAGGGCGATGCCATGTAGCCATGTTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAACATAACTCATGCCCTGTTTGCCGTGTTGAGTTACCACCACATGGACAAGTTAGTCCTCATGCTAGTCGTAATGTGGGAGGAAGTAATGCAGAAAGCACCAACAATGATAACCTTAGGGAGAGAGAGCATAGCCAACAGAACCAAGGAAGGCGGAGTCCGTTTTCATTTTTGTGGCCATTCCGTTCTTCTAGCTCAAGCAGTAATCAATATGCTGAGACTAGAGGAAGCAACTCTTCAAATAGTCGTGACCAGAATAATGGAACGAACCATGGCCGATGGCACTTTGATGAGGAGGTGGTGGTGGATGGAAGCCCGTGA 990 0.4596 MSSEATHWCYECRRPIILEGRDFTCPHCDGGFVIELREVQRTEHLEDFHQVPDIFGAIHAVMGRRFPETSFLDSVDNIMRHRMAGRNPNFDVRRRSIAAMGPDQSWGVISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPPPASRSSIDAMPTITITQAHLRSDSHCPVCQDKFELGSEARAMPCSHVYHSDCIVPWLVQHNSCPVCRVELPPHGQVSPHASRNVGGSNAESTNNDNLREREHSQQNQGRRSPFSFLWPFRSSSSSSNQYAETRGSNSSNSRDQNNGTNHGRWHFDEEVVVDGSP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2966g00011 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 236 - -
Pral2966g00011 329 SMART ring_2 191 231 IPR001841 -
Pral2966g00011 329 MobiDBLite consensus disorder prediction 241 329 - -
Pral2966g00011 329 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Pral2966g00011 329 MobiDBLite consensus disorder prediction 313 329 - -
Pral2966g00011 329 MobiDBLite consensus disorder prediction 272 312 - -
Pral2966g00011 329 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
Pral2966g00011 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Pral2966g00011 329 Pfam Ring finger domain 190 232 IPR001841 -
Pral2966g00011 329 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Pral2966g00011 329 SUPERFAMILY RING/U-box 171 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2966g00011 Pral-Chr2966 47591 50126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2966g00011 135 249 C3H Transcription Factor Family AT5G01980 41.880 5.87e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2966g00011 K11982 - gmx:100813674 447.973