Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2959g00003 ATGGATTCCCTCAGAAAATCATTCAAGTCCTATTATTCCTACAAACATCCCAGAAAGATCTCCGCGGGCACTGACGCCGACTCCGACCACGAGCAGCTTCCCATTCTCCTGGATCAAGAAACTCCCGACCATCATCCTCCTCGTCACCTCACTGCTCCATCATCCATGACCTCTGCTACTCCCCCACATCGCCCCGAGGTTGTCCTTAAAATCGACGAAGGCGACTCCAGAGGTCCCGCAGTTCAACAGGGTGGCAAGATTTGGAGAGAATCTAGCTATGACTTCTGGAACAATGGAGACGTGAGCAAGAGTGCCAGCGATGGGAGTGCTGGCGCTAGTACTAGCGGTAATGACGCGGATAGCTTTGATTTCCGGCATCGTGAGCAGGGTTCTGAGGATCCACCTTCCATGCTCATTGGTAAGTTCTTGCACAAACAGAAAGCGTCTGGTGACATGTCGCTGGATATGGATTTAGAAATGGAGGAGTTCCAGCACGACTACAAATTGCCTCCGGTGGAAGAGTCTCCGCAGCTCAATCGCGTTTCCAAGGACCTCAAAGTCTCGTTTGAGGACCCCACTTCCAATGTTGTTGAGGCGGCAACTGAAACCTTCAGACGAAGGCACAAGGACTCGCCGGGTCACACCGAAGTTCATAAATCGCCGCAACGTGGTTCGCCGGGTGTCGCTCAAAGTGGTAATGCTGGTGCCGGAGATGGCGAGGTGGTGAGATGTACCTCCAACGCCTCTTACGAAAGGAATCTTTCTTTGCAGAGGAAATCTGCTTTGCTGAAGACCAGAAATAAGTCAAGATTGTTGGACCCGCCGGACCAGCCGGAACGAAAGTCTGGTCGAGTGGCAAAGTCAGGGCAAATGTTATCGACGATGTTAGGGAAGAAAGGGGAGGACGAGGAAGACGACCCATTTTTCGAAGAGGACGTGCCGGATGAGTTGAAAAGGACCCACTTTAGCATATGGGTTCTGCTTGAATGGTTGAGTTTGATTTTGATTGTTGCTGCGCTAGCATGCACGCTGAGTATCCCAGTTTTGAGGAATAAGATTCTCTGGAAGCTCCGGTTATGGAAATGGGAGGTGATGATCCTGGTTCTAATTTGTGGTCGGTTGGTTTCTGATTGGGTAATTCGAATTTTAGTGTTCTTTATCGAAAGAAATTTCCTTTTGCGGAAGAGAGTCCTCTATTTTGTATATGGTGTGAGGAAGGCAGTTCAAAATTGTCTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTGTTATTCGATAAGAAGGTTGAGAGGGAGACTAGAGGCAGCAACGCCCTTCAATATGTCACGAAGGTCTTGGTCTGTTTCTTGGTGGGCACTTTGGTGTGGTTGGCAAAAACTCTTGTGGTTAAGGTTATGGCTTCCTCCTTCTATACAAGCACATACTTTGATAGGATTCAGGAATCACTGTTTAATCAATTTGTGATCGAAACACTGTCGGGGCCACCTCTGATCGAAATCCAGAAGTCAGAGGAAGAGGAACAAAAACTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTAACATTCCCCCTGAGCTTAGGGCAACTGCCTTCTCCACAACCAAGAGTCCAAGGGCAGCTACCTTCTCTAGAACTAAGAGTCCAGGGGCGACGAAAAGCGGAATGCTCCAGAAAAGCCCCCGTCTTATAAGTGGAAAGTTTTCTCGTCCACTCTCCCATAAGTCAGATGATGGGATTACTATTGATCACCTGCATAAGCTGAATCCGAAAAATGTCTCCGCTTGGAATATGAAAAGGTTAATGAATATGGTCCGGCACGGCACTCTTTCTACACTGGATGAGCAGATACTTGATTCAGCTCAAGATGATGAAAATGCTACACAAATTAGAAGTGAAAATGAGGCAAAAGCTGCGGCAAAGAAAATATTTCAGAATGTTGCCAGGCGGGGTTGCAGGTTCATTTACCTGGAGGATTTGATGCGTTTTATGCGGGAAGATGAAGCCGAGAAAACCATGGATCTCTTTGAAGGAGCATCTGAGTCGGGGAAGATCAGCAAATCTTCCTTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCGCTTGCTTTGACACTGACTGATACCAAAACCGCAGTGAACAAACTTCATCGAATACTCAATTTTATAGTTGGCATCATCATACTAGTTATTTGGCTATTAATACTGGGAATTGCCAGCACCAAATTGCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCTTTTGTATTTGGAAATACCTGCAAGACGGTATTTGAAGCAATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGAAATCGATGGGATCCAGATGGTTGTGGAAGAAATGAATATTCTGACAACCATATTTTTAAGATATGACAATCAAAAAATAATCATCCCCAACAGCGTCCTTGCTACTAAGGCCATACATAATTTCTACCGGAGTCCTGAAATGGGAGATGCTATTGATTTCTTTGTGCACGTGTCCACCCCAGCTGAAAAGATTGCCCTCATGAAACAAAGAATACATAGCTTCATCGACAACAAGAAGGAGCACTGGTATCCTCAAGCTTTTATAGTCTTCAGGGATCTGGAGCAATTAAACATGATAAGGATCTCGATTTGGCCAACTCATAGAATGAACCACCAAGACATGGGAGAAAGGTTTGTCAGAAGATCCCTTCTGATTGAAGAGCTGCTCAGGATATTCCGTGAGCTTGACATCCAGTATCGTCTTCTTCCTCTTGATATTAACGTTAGAAGCATGCCTACCACTTCTGAACGGCTTCCACCTAGTTGGGCCACAATCACAAGTTGA 2868 0.4596 MDSLRKSFKSYYSYKHPRKISAGTDADSDHEQLPILLDQETPDHHPPRHLTAPSSMTSATPPHRPEVVLKIDEGDSRGPAVQQGGKIWRESSYDFWNNGDVSKSASDGSAGASTSGNDADSFDFRHREQGSEDPPSMLIGKFLHKQKASGDMSLDMDLEMEEFQHDYKLPPVEESPQLNRVSKDLKVSFEDPTSNVVEAATETFRRRHKDSPGHTEVHKSPQRGSPGVAQSGNAGAGDGEVVRCTSNASYERNLSLQRKSALLKTRNKSRLLDPPDQPERKSGRVAKSGQMLSTMLGKKGEDEEDDPFFEEDVPDELKRTHFSIWVLLEWLSLILIVAALACTLSIPVLRNKILWKLRLWKWEVMILVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHLLFDKKVERETRGSNALQYVTKVLVCFLVGTLVWLAKTLVVKVMASSFYTSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVNIPPELRATAFSTTKSPRAATFSRTKSPGATKSGMLQKSPRLISGKFSRPLSHKSDDGITIDHLHKLNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSAQDDENATQIRSENEAKAAAKKIFQNVARRGCRFIYLEDLMRFMREDEAEKTMDLFEGASESGKISKSSLKNWVVNAFRERRALALTLTDTKTAVNKLHRILNFIVGIIILVIWLLILGIASTKLLLFVSSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGIQMVVEEMNILTTIFLRYDNQKIIIPNSVLATKAIHNFYRSPEMGDAIDFFVHVSTPAEKIALMKQRIHSFIDNKKEHWYPQAFIVFRDLEQLNMIRISIWPTHRMNHQDMGERFVRRSLLIEELLRIFRELDIQYRLLPLDINVRSMPTTSERLPPSWATITS 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2959g00003 955 Gene3D - 780 829 IPR023408 -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 265 288 - -
Pral2959g00003 955 Pfam Mechanosensitive ion channel 721 925 IPR006685 GO:0016020|GO:0055085
Pral2959g00003 955 MobiDBLite consensus disorder prediction 103 137 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 201 217 - -
Pral2959g00003 955 FunFam Predicted mechanosensitive ion channel 780 829 - -
Pral2959g00003 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 950 IPR016688 -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 535 561 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 269 283 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 103 119 - -
Pral2959g00003 955 SUPERFAMILY Sm-like ribonucleoproteins 770 829 IPR010920 -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 20 47 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 201 240 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 535 560 - -
Pral2959g00003 955 Coils Coil 500 520 - -
Pral2959g00003 955 MobiDBLite consensus disorder prediction 19 62 - -
Pral2959g00003 955 PIRSF Memb_At2g17000 44 955 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2959g00003 Pral-Chr2959 33169 37579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2959g00003 64 955 Mechanosensitive Ion Channel Family AT1G78610 57.516 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2959g00003 K22048 - gmx:102665658 1268.45