Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2950g00002 ATGCAAGACATGAAGCAGAGGCAGCATCAGCAAGATAAGGAAGAATCCAAGAAGAAGGAGCGTCACATTGTCTCTTGGACTCAAGAGGAGGATGATATTCTTAGAGAGCAGATTAGCATTCATGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGACAAAACAACAAGACAATGCAGGAGAAGGTGGTACACATACTTAAATTCTGATTTCAAGAAAGGAGGGTGGTCACCAGAAGAGGATATGCTATTATGTGAGGCTCAGAAGATATTTGGCAACAGATGGACAGAAATAGCTAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAACCGGTTCACCACACTTTGCAAAAAGAGAGCGAAATACGAAGCCTTGGCCAAAGAGAATAATAGTCCTCCATTGATAAATTCAAACAATAAAAGGATCATTTTCCAACAAGTCTACACTACAGATGCAGCATCAGAGGCCACAGCATCAATTAAGAAGATAAGGGCCCACATCCCTGATGCTTCAGCGAGGATCGCCTATGGAGACAGATCACATAGACAATTTGGAGCGCCAGTTAGTCAGCAACCTAGAGTGCCATTTGCTGTGTTATCTAATTTCGAGGATAACAGCTTGCACCAACGTCCTGTCTGCAGTGCCAAAGTCAGCGGTTACGCCCAGAATAACAAGACTCAGGGAACATTCCTGAAAAAGAATGATCCAAAGATAACCATGTTGATGCAGCAAGCAGAATTATTAAGCTCACTTGCAGTGAAAGTTAATACAGAGAACATGGACCAGACTCTTGAGAATGCATGGAAGGTTCTGCAAGACTTTCTGAACCGAACAAACAAATCAGATCTTTCGAGATATAAAATCACAGATTTACAGCTTCAAAATCTCAAAAATATGGCGGAGGACATAAAGAGTGGTCATGAGGGGAGCCAACCATATTCAAGGCAACCGGAGCTACATGAGGACTCTCCAAGCAGCTCTGAATATAGTACAGGATCAACTATACTGGCCCATTCAGCTTTTGATAATTTGGAACATTCACTGCATCAAAATGTTGGAACCGAAGGGAAGCCTACAGAAAGTGAGGGGAAAAGAGGAATTAGTCGTTCTGAGAAGCAAGTTCTTTGTGCTTCGACTGCAGATCAAGATATCTTGCCATCTTTTGAAGAACAGATAAACGATGATTTCATTGTTTCTGCCTTGTCAAGTAGAGAGTTCAGTTCCCCTGTTCAAGTTACTCCTCTGTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTCCTGATGAAAACACTGGGAATGGGATCCCCATCTCAGAATCAAAGTGCAAAAGCCTCACAACCACCACCATGCAAAAGAGCCTTACTACAGAGTCTATAA 1416 0.4244 MQDMKQRQHQQDKEESKKKERHIVSWTQEEDDILREQISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENNSPPLINSNNKRIIFQQVYTTDAASEATASIKKIRAHIPDASARIAYGDRSHRQFGAPVSQQPRVPFAVLSNFEDNSLHQRPVCSAKVSGYAQNNKTQGTFLKKNDPKITMLMQQAELLSSLAVKVNTENMDQTLENAWKVLQDFLNRTNKSDLSRYKITDLQLQNLKNMAEDIKSGHEGSQPYSRQPELHEDSPSSSEYSTGSTILAHSAFDNLEHSLHQNVGTEGKPTESEGKRGISRSEKQVLCASTADQDILPSFEEQINDDFIVSALSSREFSSPVQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMGSPSQNQSAKASQPPPCKRALLQSL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2950g00002 471 CDD SANT 78 119 IPR001005 -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 308 335 - -
Pral2950g00002 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 73 IPR017930 -
Pral2950g00002 471 Pfam Myb-like DNA-binding domain 26 86 - -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 1 22 - -
Pral2950g00002 471 ProSiteProfiles Myb-like domain profile. 25 69 IPR001005 -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 354 374 - -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 313 335 - -
Pral2950g00002 471 FunFam Transcription factor MYB124 18 74 - -
Pral2950g00002 471 SMART sant 22 71 IPR001005 -
Pral2950g00002 471 SMART sant 74 122 IPR001005 -
Pral2950g00002 471 CDD SANT 25 69 IPR001005 -
Pral2950g00002 471 Gene3D - 76 146 - -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 442 471 - -
Pral2950g00002 471 MobiDBLite consensus disorder prediction 442 459 - -
Pral2950g00002 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Pral2950g00002 471 FunFam Transcription factor MYB124 77 146 - -
Pral2950g00002 471 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pral2950g00002 471 Gene3D - 12 74 - -
Pral2950g00002 471 PANTHER MYB PROTEIN-RELATED 25 243 - -
Pral2950g00002 471 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2950g00002 Pral-Chr2950 27419 33531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2950g00002 14 319 MYB Transcription Factor Family AT2G02820 59.744 4.18e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2950g00002 Myb_DNA-bind_6 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2950g00002 K09422 - gmx:100807667 630.557