Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2941g00020 ATGCCAACTTTGATGCAGTCCAATCTCCCAATTCACCTTCACCACGCTAGATATATCCCAGGTCCACCTCTCTGTTTTCCTCATCACAAAAACATGGTTCTCTTCCTTTGCTCTGTCTTCCTTCTTGTTTCATTTGCTACTGCTTGCGATCGATGCGTCCACCAAACCAAGGCTGCCTATTTCTCTCAGGACGCCGCCCTTTCCTCTGGGGCATGTGGGTATGGGTCCCTGGCGTTGGAATTAAGCGGTGGACACCTTGCAGGTGGTGTTCCTTCCTTGTACAAAAATGGAGCCGGTTGTGGTGCGTGCTTTCAGATAAGATGCAAGAGCTCAAGTCTGTGTACCAAATCAGGTAGCAGAGTTGTTTTGACGGATCTCAATACCCACAATGAAACTGATTTTGTGCTCAGCAGAAGTGCCTTCGTGGCCATGGCTCAGAAAGGAAGCGGGGAACAACTTTTGAAGCTTGGGATCTTGGATGCTGAATTTAAGAGAGTTCCGTGTGAGTATAAAAATAAGAATTTGGCGGTCCGGGTGGAAGAATCAAGCAAAAAACCATATTACTTGGCAATTAAATTTCTGTACGAAGGAGGTCAAACAGAGATAGTAGGCGTTGATGTTGCTCAGGTGGAGTCGTCAAACTGGAGCTTCATGAGCAGAAACCACGGAGCAGTGTGGGACACGAGTAGGGTTCCAGGAGGCGCATTACAAATGAGGATAGTGGTAACATCAGGGTACGACGGAAAGTGGCTGTGGGCGAAGAAGGTGTTACCTGCAGATTGGAAAACGGGACAAGTGTACGACACTGGTGTTCAGATAAGTGACATTGCGCAGGAGGGATGTTCTCCCTGTGACGACGGCACCTGGCCGTGA 873 0.4857 MPTLMQSNLPIHLHHARYIPGPPLCFPHHKNMVLFLCSVFLLVSFATACDRCVHQTKAAYFSQDAALSSGACGYGSLALELSGGHLAGGVPSLYKNGAGCGACFQIRCKSSSLCTKSGSRVVLTDLNTHNETDFVLSRSAFVAMAQKGSGEQLLKLGILDAEFKRVPCEYKNKNLAVRVEESSKKPYYLAIKFLYEGGQTEIVGVDVAQVESSNWSFMSRNHGAVWDTSRVPGGALQMRIVVTSGYDGKWLWAKKVLPADWKTGQVYDTGVQISDIAQEGCSPCDDGTWP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2941g00020 290 SUPERFAMILY PHL pollen allergen 173 268 IPR036749 -
Pral2941g00020 290 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Pral2941g00020 290 PRINTS Major pollen allergen Lol pI signature 245 262 IPR005795 GO:0005576|GO:0019953
Pral2941g00020 290 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Pral2941g00020 290 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Pral2941g00020 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 173 IPR007112 -
Pral2941g00020 290 Pfam Lytic transglycolase 88 150 IPR009009 -
Pral2941g00020 290 Gene3D - 170 273 IPR036749 -
Pral2941g00020 290 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Pral2941g00020 290 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Pral2941g00020 290 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pral2941g00020 290 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Pral2941g00020 290 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Pral2941g00020 290 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Pral2941g00020 290 PANTHER EXPANSIN-B3 41 272 - -
Pral2941g00020 290 Pfam Expansin C-terminal domain 176 258 IPR007117 -
Pral2941g00020 290 CDD DPBB_EXLA_N 44 170 - -
Pral2941g00020 290 Gene3D - 43 169 IPR036908 -
Pral2941g00020 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 269 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2941g00020 Pral-Chr2941 137236 138982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2941g00020 46 289 Expansin Gene Family AT4G38400 62.195 1.99e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2941g00020 - - cave:132192007 421.394