Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2934g00008 ATGCCTTCTCTTCCTGTCTCCGATATTGCTCTTTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGGCTCTGATTGAAGAGGGAGTTTCTGCGAAGAAGAAGAAGGAGAGCAAGAAGCGTAAAGCTTTGGATGCTGAGATGGTGGCGAGTGAGGATGAGGTAAAGAGTGAGACTAGCTCCGAGTTGGTTGAGCCTGATAGTGTGAAAGACAAGAGGAAGAAGAAAAAGGCCAAGATGGATGAACCAGAAGATAAAGAGGAAGAGGTTGAGAAGGAGAATCCTAATGCAATTTCGAACTTTAGGATCTCGGCCCCGTTGAGAGCCAAGTTAAAAGAGAAGGGGATTGAATCACTATTTCCTATTCAGGCCATGACTTTTGCTACCATCCTCGACGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCGATATTAGAGTCTTTGACAAATGGTCCTACAAAAGCAGCGAGAAAGTCTGGGCATGGAAGGTCTCCATGTGTTCTTGTGCTTTTACCTACTAGAGAATTGGCCAAACAGGTGTTCGCTGATTTTGAGGTTTATGGTGGGGCACTGGGATTGACCTCTTGTTGTTTATATGGTGGAGCTCCATATCAAGGACAAGAAATTAAACTCCAGAGGGGCGTTGATGTTGTTGTTGGAACTCCAGGACGGATAAAAGATCATATAGAGAGGAAAAATCTTGACCTGAGCCAACTTAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGCGGATGGGTTTTGTCGAAGATGTTGAGCTCATTCTGGGTGAGGTAGAGGATGTTAGTAAAGTCCAGACACTTCTTTTCAGTGCTACATTGCCAGAGTGGGTTAAGAGTATTTCTAAGAAATTTCTGAAATCTGATAAAAAAACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCATTAATGTTAGGCATATCGTTCTCCCGTGCTCCAGTTTTGCCAGGTCCCAACTTATTCCAGATGTTATACGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAAACAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTTACCTTGGCTGGTTTCAGGGCGGGGAAATTTACCACATTAGTGGCCACCAATGTGGCAGCCCGTGGTTTGGACATTAATGATGTTCAGTTGATTATCCAGTGTGAACCCCCACGTGATGTAGAAGACTATATTCATCGGTCTGGGCGCACTGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAAGTCAAATATATCAAAAATAGAAAAAGAATCTGGTGTGAAATTTGAACACATATCCGCTCCCCAGCCTGCTGATATTGCTAAAGCTGTTGGTGGGGATGCTGCTAAAATGATAACCCAAGTGTCCGATAGTGTCGTCCCTGCATTCAAATCTGCCGCAGAGGATCTTTTAAACAATTCAGGCTTAACAGCTGTTGATTTACTTGCAAAAGCTCTTGCCAAGACTATTGGTTATACGGATATAAAGAAAAGATCACTACTTACTTCCTTGGAGAATTATGTCACGCTACTTCTTGAGATTGGAAGACCCGTTTACACCCCTTCATTTGCATTTGGAATCTTGAGGAGATTCTTGCCTGAGGAGAAGGTTGACTCTGTGAAGGGTCTCACTATCACTGCAGATGGAAATGGTGCTGTCTTTGATGTGCCAGCTGAGGACCTGGATACCTTCCTTACTGGTCAGCAAAACGCTGCTAATGTTAGCTTAGAAGTATTGGAAGTATTACCAAGTTTGCAAGAAAGAGACCAATCAAGAGGTAGATTTGGTGGTGGTCGTGGCAGCGGTGGTGGCAACAGGTTTTCCGGTGGAAGGGGTGGTGGCAACAGGTTTTCTGGTGGAAGGGGTGGTGGTAGATTTTCTAATGAGAGAAATGGTAGGTTTTCCAATAATTCTAGAGGTGGGAGAGGTCGTGGCAACAATGGGGCAAAGAGGTGGTGA 2091 0.4486 MPSLPVSDIALSETPKDKKEKKKKMKNEALIEEGVSAKKKKESKKRKALDAEMVASEDEVKSETSSELVEPDSVKDKRKKKKAKMDEPEDKEEEVEKENPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFATILDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAARKSGHGRSPCVLVLLPTRELAKQVFADFEVYGGALGLTSCCLYGGAPYQGQEIKLQRGVDVVVGTPGRIKDHIERKNLDLSQLKFRVLDEADEMLRMGFVEDVELILGEVEDVSKVQTLLFSATLPEWVKSISKKFLKSDKKTADLVGNEKMKASINVRHIVLPCSSFARSQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRKSNISKIEKESGVKFEHISAPQPADIAKAVGGDAAKMITQVSDSVVPAFKSAAEDLLNNSGLTAVDLLAKALAKTIGYTDIKKRSLLTSLENYVTLLLEIGRPVYTPSFAFGILRRFLPEEKVDSVKGLTITADGNGAVFDVPAEDLDTFLTGQQNAANVSLEVLEVLPSLQERDQSRGRFGGGRGSGGGNRFSGGRGGGNRFSGGRGGGRFSNERNGRFSNNSRGGRGRGNNGAKRW 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2934g00008 696 MobiDBLite consensus disorder prediction 673 687 - -
Pral2934g00008 696 Pfam Helicase conserved C-terminal domain 354 446 IPR001650 -
Pral2934g00008 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 459 IPR027417 -
Pral2934g00008 696 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 62 492 - -
Pral2934g00008 696 MobiDBLite consensus disorder prediction 12 99 - -
Pral2934g00008 696 Pfam DEAD/DEAH box helicase 125 302 IPR011545 GO:0003676|GO:0005524
Pral2934g00008 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 485 IPR001650 -
Pral2934g00008 696 SMART helicmild6 369 446 IPR001650 -
Pral2934g00008 696 Pfam GUCT (NUC152) domain 535 630 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pral2934g00008 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 271 IPR027417 -
Pral2934g00008 696 Gene3D - 552 624 - -
Pral2934g00008 696 CDD DEADc 112 309 - -
Pral2934g00008 696 Gene3D - 324 551 IPR027417 -
Pral2934g00008 696 Coils Coil 39 59 - -
Pral2934g00008 696 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Pral2934g00008 696 SMART ultradead3 120 332 IPR014001 -
Pral2934g00008 696 FunFam DEAD-box ATP-dependent RNA helicase 7 552 624 - -
Pral2934g00008 696 SUPERFAMILY RNA-binding domain, RBD 539 622 IPR035979 GO:0003676
Pral2934g00008 696 MobiDBLite consensus disorder prediction 633 696 - -
Pral2934g00008 696 CDD SF2_C_DEAD 329 455 - -
Pral2934g00008 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 314 IPR014001 -
Pral2934g00008 696 CDD GUCT_RH7_like 542 627 - -
Pral2934g00008 696 Gene3D - 51 314 IPR027417 -
Pral2934g00008 696 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2934g00008 Pral-Chr2934 29822 34731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2934g00008 120 452 Eukaryotic Initiation Factors Gene Family AT1G72730 32.653 1.89e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2934g00008 K16911 - qsa:O6P43_005503 949.503