Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2930g00002 ATGATTTCGCTACCAAAAAAAGGAAGCATCGTGGTTTACTTCCCACAGGGCCACCTTGAGCAGCAGGCTCAGGATCTTCCGGTCTCCGCTTACAATATCCCACCCCATGTTTTCTGTCGCGTTGCAGATGTTAAGCTCCATGCGGAGGAAGGTATAGACGAGGTGTACTGTCAGGTGTCGCTGGTTCCTGAAAGTGAGCAAGCTGAAAGAAGATTTCGGGAAGGTGAAATCGATGCTGACTGTGAAGATGAGGATGCTGCAGCTGCAGTGAAGTCTACAACGCCACATATGTTCTGCAAGACCCTGACAGCTTCTGATACTAGCACTCATGGGGGATTCTCTGTGCCTAGGCGTGCAGCTGAAGATTGCTTTCCTCCGCTGGATTACAATCAACAGCGTCCTTCGCAAGAACTTGTGGCAAAGGATCTGCATGGCCTGGAGTGGAAGTTCAGGCATATTTACAGGGGGCAGCCTCGCAGGCATTTGCTTACAACTGGTTGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTACTGTTTCTGAGGGGTGAAGATGGAGTTCTGAGATTAGGGATTCGCAGGGCATCTCAGTTGAAATGTGGTGCTAACTTTTCAGTTCCCGCTGGCCTGCATCTTAATCCCAGCAGTTTCATGGATGTGGTCAATGCAATATCTGCAAGATGTGCCTTTAGCGTTTGCTATAATCCAAGGGTGAGCTCGTCAGAGTTCATAATTCCACTCAACAAATTTTTGAAGGGCCTTGATCAATTTTATTCAGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGGTGCACAGGACTAGTTGTTGGAATTGGCGATGCAGATCCTGTTAGATGGCCCGGATCTAAATGGAGATGCCTTATGGTAAGGTGGGAAGATATGGAAGCCACTAGGCATAACAGGGTTTCCCCGTGGGAAATTGAGCCATCCGGTTCTGCTTCCTCTCCCAACAACTTCAATGCAGCTGGTTTAAAGAGGACCAGGATTGGTTTGCCTTCTTCAAAACAAGAATTTCCAGTTCCAAATGGGATTGGGACACCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGCAAGAAATTTTGGGTGTTAA 1155 0.4753 MISLPKKGSIVVYFPQGHLEQQAQDLPVSAYNIPPHVFCRVADVKLHAEEGIDEVYCQVSLVPESEQAERRFREGEIDADCEDEDAAAAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRASQLKCGANFSVPAGLHLNPSSFMDVVNAISARCAFSVCYNPRVSSSEFIIPLNKFLKGLDQFYSAGMRFRMRFETEDAAERRCTGLVVGIGDADPVRWPGSKWRCLMVRWEDMEATRHNRVSPWEIEPSGSASSPNNFNAAGLKRTRIGLPSSKQEFPVPNGIGTPDFGESLRFQKVLQGXRNFGC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2930g00002 385 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 351 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral2930g00002 385 SMART B3_2 98 200 IPR003340 GO:0003677
Pral2930g00002 385 Gene3D - 96 199 IPR015300 -
Pral2930g00002 385 Gene3D - 262 334 - -
Pral2930g00002 385 FunFam Auxin response factor 96 200 - -
Pral2930g00002 385 Pfam Auxin response factor 225 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral2930g00002 385 ProSiteProfiles B3 DNA-binding domain profile. 98 200 IPR003340 GO:0003677
Pral2930g00002 385 FunFam Auxin response factor 261 332 - -
Pral2930g00002 385 CDD B3_DNA 96 198 IPR003340 GO:0003677
Pral2930g00002 385 Pfam B3 DNA binding domain 98 199 IPR003340 GO:0003677
Pral2930g00002 385 SUPERFAMILY DNA-binding pseudobarrel domain 91 203 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2930g00002 Pral-Chr2930 13048 17523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2930g00002 97 383 B3 DNA Binding Superfamily AT2G33860 67.361 1.39e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral2930g00002 B3 2.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2930g00002 K14486 - gmx:100808119 626.706