Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2921g00007 ATGGACATGTTTCTTTCAGGCTCCTTGCTCATTGATGACCTACTCAACGTCTCCAACGTAGACCTCACCACCATCTTCACCGACTCCCACCGCCGCCACCTGCCAATCCTTCCTCCGCCGCAAAACCCATTTCACCAATCCTCCTCCTCCGGCTCCTCCTTCAACAATCCTCCTTCCCTTTCTTCCGCCAACCTCACCGCCGATCTAAGCATCCCCAACGATGACGTAGCCCATCTGGAATGGCTCTCGGAATTCATGGACGGTTGCTTCCATGACGAGTTCCCGACGATAGGTGAGACGATGATGATGACGAGTTCCTCTGTTCCGCAATCCGACGCGTCGTTTGCCAGCAAAGCTGATCATCATGGCAAGCGTTCGAGAGCGGCCAGTGGGAAACCGCGACCCAAAACAGAGCCAAACGGCCGATCGTATGCTGCGGCGGCTTCGGCGGCTGCAGAGAGATCAGGCGTGCGTAGGTGCACCCACTGTGCATCGGAGAAAACACCGCAATGGCGAAGCGGACCACTGGGACCCAAGACGCTGTGCAACGCCTGTGGTGTGAGGTATAAGTCGGGTCGACTTGTACCCGAATATCGACCCGCATCCAGTCCGACGTTCGTCCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTTGAGCTCCGGAGGCAGAAGGAGATGGGGTTGGTCAAGCAGGAAGCGCAACCAGAATAA 714 0.57 MDMFLSGSLLIDDLLNVSNVDLTTIFTDSHRRHLPILPPPQNPFHQSSSSGSSFNNPPSLSSANLTADLSIPNDDVAHLEWLSEFMDGCFHDEFPTIGETMMMTSSSVPQSDASFASKADHHGKRSRAASGKPRPKTEPNGRSYAAAASAAAERSGVRRCTHCASEKTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLSQHSNSHRKVLELRRQKEMGLVKQEAQPE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2921g00007 237 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Pral2921g00007 237 Gene3D - 151 226 IPR013088 GO:0006355|GO:0008270
Pral2921g00007 237 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Pral2921g00007 237 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Pral2921g00007 237 FunFam GATA transcription factor 150 236 - -
Pral2921g00007 237 SMART GATA_3 154 204 IPR000679 GO:0006355|GO:0043565
Pral2921g00007 237 PIRSF Txn_fac_GATA_plant 142 237 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral2921g00007 237 PIRSF Txn_fac_GATA_plant 2 152 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral2921g00007 237 MobiDBLite consensus disorder prediction 43 59 - -
Pral2921g00007 237 PANTHER GATA TRANSCRIPTION FACTOR 110 226 - -
Pral2921g00007 237 MobiDBLite consensus disorder prediction 34 59 - -
Pral2921g00007 237 MobiDBLite consensus disorder prediction 104 150 - -
Pral2921g00007 237 CDD ZnF_GATA 159 206 IPR000679 GO:0006355|GO:0043565
Pral2921g00007 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2921g00007 Pral-Chr2921 104331 105297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2921g00007 37 235 C2C2-Gata Transcription Factor Family AT2G45050 50.450 9.27e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral2921g00007 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2921g00007 - - pcin:129288162 273.478