Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2915g00002 ATGGCTCCAGACTCCGTCTCTGATCTTCTCTGCGAAATTCTCTTCTTTTCTTCTTTCTTCTTTTGTTTTGTGGCCACCGAACTTCTCTGCATCGAGTATCCATTTTTCGCTGCTCTGTTTTTCCAACACGAAGAAGATGATCATCATCAGCATGCCCCACTCATTGTTTCTGAATATCCTCAACGCTCCAGGTTGCCCAAGTTCATCAATCCCTCCTTCATCATTTCTCTACTCACAAACAATTCCTCTTCCCTCCTTTTACCACCACCACCACGACCACCACCACCACCACCATCATCTTCTTCTTCTTCTTCTGCTTCTTCTCCTTGGCCTAACCCAGAAACTAAGCATGCGAAGTCTGCAATTAAAATTGAGGAACCTTTGGAAGTCATCTGTGAAATCTGTGCAGAAACTAAAAGACCTAATCAGATGATCAAGAACCAGACATGCCGCCATTCTTATTGCTCTGATTGTATGACAAAACATGTGGCCACGAAAGTCCAAGACACCATAACAGCAGTTCCATGTCCTGGGCTGGGTTGTAAGAGTGTTTATGAGCTTGAAGCTTGTCGGCCTTGGATTCCCAAGGACTTACTAGAAAGATGGGATAAGGCTCTGTGTGAGGCTCTTTTTCTGCAAGTGCCTAAATTTTATTGCCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGATGGATCAAACAGCTGCAAGGGAAACAGAGTGCCCTATTTGCCATAGATTGTTCTGTCCAAGGTGTAATGTCCCATGGCATCATGGAGTTGACTGTGAGGAATACCAGGGACTGAATGAGAATGAGAGACAGAGGGAAGATCTGCTTGTGAGACAGCTTGTTAAAGATAAGAAATGGGGAAGGTGTCCCAAGTGTAAGTTCTATGTGGAGAAGACTCAGGGATGCTTGCACATCACTTGCAGGTGCAAATATGAGTTTTGTTACAAGTGTGGAAAAGAATGGAATTCTTCTCATGGAGGCTGCCAAAGATATTAG 1014 0.4418 MAPDSVSDLLCEILFFSSFFFCFVATELLCIEYPFFAALFFQHEEDDHHQHAPLIVSEYPQRSRLPKFINPSFIISLLTNNSSSLLLPPPPRPPPPPPSSSSSSSASSPWPNPETKHAKSAIKIEEPLEVICEICAETKRPNQMIKNQTCRHSYCSDCMTKHVATKVQDTITAVPCPGLGCKSVYELEACRPWIPKDLLERWDKALCEALFLQVPKFYCPFKDCSAMMLVENEMDQTAARETECPICHRLFCPRCNVPWHHGVDCEEYQGLNENERQREDLLVRQLVKDKKWGRCPKCKFYVEKTQGCLHITCRCKYEFCYKCGKEWNSSHGGCQRY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2915g00002 337 Pfam Zinc finger, C3HC4 type (RING finger) 132 177 IPR018957 GO:0046872
Pral2915g00002 337 SMART ibrneu5 200 265 IPR002867 GO:0008270
Pral2915g00002 337 SMART ibrneu5 275 334 IPR002867 GO:0008270
Pral2915g00002 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 210 IPR013083 -
Pral2915g00002 337 FunFam RBR-type E3 ubiquitin transferase 267 337 - -
Pral2915g00002 337 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 327 IPR031127 GO:0004842|GO:0016567
Pral2915g00002 337 MobiDBLite consensus disorder prediction 86 102 - -
Pral2915g00002 337 SUPERFAMILY RING/U-box 204 269 - -
Pral2915g00002 337 SUPERFAMILY RING/U-box 129 209 - -
Pral2915g00002 337 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Pral2915g00002 337 Pfam IBR domain, a half RING-finger domain 215 265 IPR002867 GO:0008270
Pral2915g00002 337 Pfam IBR domain, a half RING-finger domain 282 333 IPR002867 GO:0008270
Pral2915g00002 337 Gene3D - 262 337 - -
Pral2915g00002 337 CDD Rcat_RBR_unk 291 327 - -
Pral2915g00002 337 ProSiteProfiles TRIAD supradomain profile. 128 337 IPR044066 -
Pral2915g00002 337 ProSiteProfiles Zinc finger RING-type profile. 132 177 IPR001841 -
Pral2915g00002 337 MobiDBLite consensus disorder prediction 86 118 - -
Pral2915g00002 337 CDD BRcat_RBR_unk 215 268 - -
Pral2915g00002 337 SUPERFAMILY RING/U-box 276 334 - -
Pral2915g00002 337 FunFam RBR-type E3 ubiquitin transferase 128 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2915g00002 Pral-Chr2915 23520 24994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2915g00002 132 324 C3H Transcription Factor Family AT2G19610 29.208 5.15e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2915g00002 K11975 - qsa:O6P43_027978 331.257