Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2915g00001 ATGCCTCAAGATTCCGCCTCTGATCTTCTCCGTTCTGATGATTCTTCCCTCTCAGCTCTGTTTCATGAGGATGAGGATGGTGATGGTCATGCCCCATTTACCGATGATGAATGTGCTCAACGCTTGCAGTTTCAGGAAACCCTTGACTCTTCCTCGATCACTTGCCAAGAGCCAAACAAGGATCCTCCTCCTCCTCCTCCTTTACTCCTTTTACCTTCGTCTTCATCACCTTCTCCTCCTTTAAAAATGCCTGACAATTGCCCTCCCCCAGAAACTGACCCCGTGAAATGCTCAAATGAAACGGGCGAGTCCTCGCAGGTCATCTGCGAAATCTGTGCAGAAACTAAAGAGGCTTCCCAGATGTTCAGAAATCAGAGATGTCACCACTCGTTTTGTTCTGATTGTGTCACTAAACAAGTGGCCATAAAAATTCAGGATGGTATAACGGTAGTTTCCTGTCCTGGTTTGGATTGTAAAAGTGTTCTTGAGCTTGATGCTTGTCGGCCATGGATTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTTTGTGCGAAGCTCTGTTTCTGGCAGCCCCTAAATATTATTGTCCCTTTAAGGATTGCTCAGCTATGTTGCTCATTGAGAATGAAGAACGAGAAGATCATCAAGCTATAAGGGAAGCAGAGTGCCCTGTTTGCCACAGACTGTTCTGCGCAAAGTGTGATGTTCCATGGCATCCTGGAGTTAACTGTGAGGAATTTCAGGGAATGGATGAGAATGAGAGAAAGAGAGAAGATCTGATTGTGATAGAGCTTGCTAAAGAGCAGAAATGGAAAAGGTGTCCCCATTGTAGGTTCTTTGTGGAGAAGACAGAAGGATGCGTGCACATCGTTTGTAGGTCAGTTTTTCTTACTGCTACTTCGTACTCAAGTAGTCATATGACAAGCTTTTTGTTTGGCTTTACTGTGTTGAAAGTTTTATCCATCTGTTAA 972 0.4486 MPQDSASDLLRSDDSSLSALFHEDEDGDGHAPFTDDECAQRLQFQETLDSSSITCQEPNKDPPPPPPLLLLPSSSSPSPPLKMPDNCPPPETDPVKCSNETGESSQVICEICAETKEASQMFRNQRCHHSFCSDCVTKQVAIKIQDGITVVSCPGLDCKSVLELDACRPWIPKDLLERWDQALCEALFLAAPKYYCPFKDCSAMLLIENEEREDHQAIREAECPVCHRLFCAKCDVPWHPGVNCEEFQGMDENERKREDLIVIELAKEQKWKRCPHCRFFVEKTEGCVHIVCRSVFLTATSYSSSHMTSFLFGFTVLKVLSIC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2915g00001 323 ProSiteProfiles TRIAD supradomain profile. 105 323 IPR044066 -
Pral2915g00001 323 SMART ibrneu5 177 244 IPR002867 GO:0008270
Pral2915g00001 323 CDD BRcat_RBR_unk 190 247 - -
Pral2915g00001 323 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Pral2915g00001 323 MobiDBLite consensus disorder prediction 49 99 - -
Pral2915g00001 323 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 292 IPR031127 GO:0004842|GO:0016567
Pral2915g00001 323 ProSiteProfiles Zinc finger RING-type profile. 109 154 IPR001841 -
Pral2915g00001 323 Pfam IBR domain, a half RING-finger domain 192 244 IPR002867 GO:0008270
Pral2915g00001 323 MobiDBLite consensus disorder prediction 17 35 - -
Pral2915g00001 323 SUPERFAMILY RING/U-box 254 292 - -
Pral2915g00001 323 MobiDBLite consensus disorder prediction 1 36 - -
Pral2915g00001 323 Gene3D - 242 296 - -
Pral2915g00001 323 SUPERFAMILY RING/U-box 182 248 - -
Pral2915g00001 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Pral2915g00001 323 FunFam RBR-type E3 ubiquitin transferase 104 190 - -
Pral2915g00001 323 MobiDBLite consensus disorder prediction 58 91 - -
Pral2915g00001 323 SUPERFAMILY RING/U-box 103 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2915g00001 Pral-Chr2915 6936 8039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2915g00001 102 293 C3H Transcription Factor Family AT2G19610 28.934 7.96e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2915g00001 K11975 - qsa:O6P43_027978 334.339