Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2908g00001 ATGGCTTCATATATACTTTCCCAGGAAATCCTTCCAAGTGAGATTGGAAATTTGACAAACCTCGAAATTCTTGCTCTTAGCTACAACAATTTGCAAGGTATTGTCTTTCTAAAGCATAACAGAGATGATGCTAACTATGCAACCAATAGGGATTTAACAAATTTGGATGCACCAACTAGGATATCTTATTATGACCTTCTACAAGGAACAAATGGATTTGATGAGGGTAATCTTCTTGGCTCTGGGAGTTTTGGATCAGTATATAAAGCAATTCTTCCAAATGAAAAGATAGTTGCTGTCAAAGTATTTAACATAGACATTGAAGAAGCATTGAGAAGTTTTGATATTGAATGTGCTGCCATGTGCAATTTACGACATCGCAATCTTATTAAGATTATCAGTAGTTGCTCAAATGATGATTTCAAGTCTCTAGTCATGGAATTCATGTCAAATGGAAGCCTTGATAGATGGTTGTACTCTCATAACTATTGTTTAGATATCCTGCAAAGGTTGAATATAATGGTTGATGTGGCAGCTGCATTAGAGTATCTTCATCATGGTACTTTAACTCGAATTGTTCATTGTGACATAAAACCAAGTAATGTTTTGTTGGATGAAAACATGGTGGCTCATCTGAGTGATTTTGGTATAGCTAAACTATTAAGTGAAGAACAGTTGGAAACTCATACAAAAACATTGGCTACAGTTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGTGGTTTCTTTCAAAGGAGATGTGTATAGCTATGGTATTGTTCTAATGGAGATGTTTACCAGGAAGAAGCCAACCGATGAAATGTTTGTTGAAGGTCTTGGTTTAAAAGATTGGTTCCCTGCTCACCCCCAAGAACCCACTTTCACTTCTCATGGAACTGGGTCTCTGACCATTTTGCCCCATCCCCATTCCTCTCTTTGTTCGACACCCACCATGCCAGCAACCACAACCACCACTAGCATGATGGCCGACAGCTCCGACCTCGACGAGCATGATGATGGACAGCGACGACTCCGATGA 1041 0.391 MASYILSQEILPSEIGNLTNLEILALSYNNLQGIVFLKHNRDDANYATNRDLTNLDAPTRISYYDLLQGTNGFDEGNLLGSGSFGSVYKAILPNEKIVAVKVFNIDIEEALRSFDIECAAMCNLRHRNLIKIISSCSNDDFKSLVMEFMSNGSLDRWLYSHNYCLDILQRLNIMVDVAAALEYLHHGTLTRIVHCDIKPSNVLLDENMVAHLSDFGIAKLLSEEQLETHTKTLATVGYMAPEYGSKGVVSFKGDVYSYGIVLMEMFTRKKPTDEMFVEGLGLKDWFPAHPQEPTFTSHGTGSLTILPHPHSSLCSTPTMPATTTTTSMMADSSDLDEHDDGQRRLR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2908g00001 346 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 149 298 - -
Pral2908g00001 346 ProSiteProfiles Protein kinase domain profile. 73 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2908g00001 346 SMART serkin_6 73 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2908g00001 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Pral2908g00001 346 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Pral2908g00001 346 Gene3D Transferase(Phosphotransferase) domain 1 149 323 - -
Pral2908g00001 346 MobiDBLite consensus disorder prediction 332 346 - -
Pral2908g00001 346 Pfam Protein kinase domain 74 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2908g00001 346 FunFam Serine-threonine protein kinase plant-type 53 148 - -
Pral2908g00001 346 MobiDBLite consensus disorder prediction 318 346 - -
Pral2908g00001 346 PANTHER OS04G0122200 PROTEIN 48 284 - -
Pral2908g00001 346 SUPERFAMILY Protein kinase-like (PK-like) 53 279 IPR011009 -
Pral2908g00001 346 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2908g00001 Pral-Chr2908 4153 10290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2908g00001 60 276 Receptor kinase-like Gene Family AT3G47570 49.367 7.81e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral2908g00001 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2908g00001 - K13420 pcin:129285519 423.705