LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2906g00001	ATGCTGCCTCACCTGCGACAAAAACCCTTCTTCTTCTTGTTGAGCTTCACAGTCTGGTCATGGTGGACTCTGGACGGCGTCGTTTCAGACCCTCAGACGACTCTGGTGACGATAGGGTGCAGCCAAATCAACGTCAGCGACGTGTCCATCTTCCAAGACAACCTAAACGCAACGTTTCGAAGCATGAGAACGCAGATCAGCAACCAGAGCAAACACTTCGCCACGGAGCAAGCAGTGGAGGGTAACAACCCCACTTATGGCCTTTTTCAGTGCAGAAACTACCTCTCCATCGCCGACTGTCTCTCTTGCTTTGACTTCGCCGCCGATAAGATCCGACACAACTGCCCCGCCGCCTCCAACGGTGCCCACATCACATACGACGGTTGCTTCATCAGGTACGAGAGCAGTAGCTTCTTTGACCAGTCAACAGACGCGGGCAACAACATTAATTGCGGGAATGAAACAAGAAACTCAACTGAACTTGCTTCAACTGTGCAACAAGTTCTGAGGAATCTGGAAATAGCCACCCCAAGAATCCCAGGTTACTTTGCAGCCACCAAAACGACAGTACCTAACAGCAACGGCTCAAACATTTATGCCTTTGCTCAATGTGTTGAGACTCTCACACAAAGCGGTTGCGACAATTGCTTGAACATTGCCTTGAGAAATTTTCAGATTTGTCTCCCAAACTCAAATGCTAAGACTTTTGATTTCGGCTGCTTCATGAGATATTCCACCACTTCCTTCTTTGCTGACAATCAAACCACTAACATCAATCACTTCTTGAAACAAGGAGATTCAAGCAAGAAGAAGGCCGTTATTATTGGTGGAGTCGTTGGAGGAACATGTTTTATTTTGATTATACTAGCATTATTTGCTTTGTATATGCGATCAAAGTCATCGAAGATGGTTCCTAAAGGTGATATTTTGGGAGCAACTGAGTTAAAAGGCCCTGTTAACTATAGGTATAAAGATCTAAAGTCAGCGACAAAAAATTTCAGTGAAAAATATAAACTAGGAGAACAAGCCTTTGGTGATTTGTACAAGGGTACTTTGAAAAATGGAAAGGTAGTTGCTATCAAGAAATTGGATTTAAGCCAATCCGAACAGATGGAGAAAGATTTTGAGAGTGAAGTGAAGTTGATAAGTAATATTCATCATCGAAATATTGTTCGACTTTTGGGATGTTGCAATAAAGGCCAAGAGAGACTTCTTGTTTACGAGTACATGAAAAACAACAATGTTGGCCAATTCTTATTTGGTGAGAATAAAGGCTCTCTGAGTTGGATGCAACGTTATGCGATAATTTTTGGCACTGCAAGAGGTTTGGCATATTTACATGAGGAATTCCATGTTTGTGTTATACATAGAGATATAAAAGCTAGCAACATCCTATTGGATGATGATTTTCAACCTAAAATTGCTGATTTTGGACTAGCAAGGCTTCTTCCAAGAGACCAATCTCATCTTAATACAAATTTTGTTGGAACAATGGGATATGTGGCACCTGAGTATGCAATGCATGGACAATTATCAGAAAAGGTTGATACTTATAGCTATGGTGTTGTAATCCTAGAAATCATAAGTGGACAAAAAAGTAGTGCATTGAAGGTTGATGATGAAAGTGAATACCTCCTCCAAAGAGCTTGGAAACTTTATGAGAGAGGAATGCATATAGCATTTGTGGACAAAACCTTAGACCCAAACGAGTATGATGCGGAAGAAGTAACGAAAATAATAGAAATTGGGCTACTTTGCACGCAAGCATCTCCTGCAGCAAGGCCAAGAATGTCTGAAGTTGTTAGAATGCTGAAAAGAAAGAGCTTAATGGAGCACAACCAGCCAACTATGCCTGTCTATGTTGATCCTACTTCTTGGCCCAAAAGAGACACTTCTGTCACTCACAGTTCGTCTTCATCAAATGCTGTTCTCTCTACTTCCATTTTATCAGGAAGGTGA	1959	0.4176	MLPHLRQKPFFFLLSFTVWSWWTLDGVVSDPQTTLVTIGCSQINVSDVSIFQDNLNATFRSMRTQISNQSKHFATEQAVEGNNPTYGLFQCRNYLSIADCLSCFDFAADKIRHNCPAASNGAHITYDGCFIRYESSSFFDQSTDAGNNINCGNETRNSTELASTVQQVLRNLEIATPRIPGYFAATKTTVPNSNGSNIYAFAQCVETLTQSGCDNCLNIALRNFQICLPNSNAKTFDFGCFMRYSTTSFFADNQTTNINHFLKQGDSSKKKAVIIGGVVGGTCFILIILALFALYMRSKSSKMVPKGDILGATELKGPVNYRYKDLKSATKNFSEKYKLGEQAFGDLYKGTLKNGKVVAIKKLDLSQSEQMEKDFESEVKLISNIHHRNIVRLLGCCNKGQERLLVYEYMKNNNVGQFLFGENKGSLSWMQRYAIIFGTARGLAYLHEEFHVCVIHRDIKASNILLDDDFQPKIADFGLARLLPRDQSHLNTNFVGTMGYVAPEYAMHGQLSEKVDTYSYGVVILEIISGQKSSALKVDDESEYLLQRAWKLYERGMHIAFVDKTLDPNEYDAEEVTKIIEIGLLCTQASPAARPRMSEVVRMLKRKSLMEHNQPTMPVYVDPTSWPKRDTSVTHSSSSSNAVLSTSILSGR	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2906g00001	652	Gene3D	Phosphorylase Kinase; domain 1	298	409	-	-
	Pral2906g00001	652	SMART	serkin_6	333	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2906g00001	652	FunFam	Cysteine-rich receptor-like protein kinase 2	146	249	-	-
	Pral2906g00001	652	Gene3D	Transferase(Phosphotransferase) domain 1	410	620	-	-
	Pral2906g00001	652	ProSiteProfiles	Protein kinase domain profile.	333	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2906g00001	652	CDD	STKc_IRAK	339	606	-	-
	Pral2906g00001	652	FunFam	Cysteine-rich receptor-like protein kinase 2	298	409	-	-
	Pral2906g00001	652	ProSiteProfiles	Gnk2-homologous domain profile.	142	249	IPR002902	-
	Pral2906g00001	652	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	87	633	-	-
	Pral2906g00001	652	Pfam	Salt stress response/antifungal	43	135	IPR002902	-
	Pral2906g00001	652	Pfam	Salt stress response/antifungal	156	246	IPR002902	-
	Pral2906g00001	652	MobiDBLite	consensus disorder prediction	614	638	-	-
	Pral2906g00001	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	454	466	IPR008271	GO:0004672\|GO:0006468
	Pral2906g00001	652	Gene3D	-	32	138	IPR038408	-
	Pral2906g00001	652	Gene3D	-	145	249	IPR038408	-
	Pral2906g00001	652	FunFam	Cysteine-rich receptor-like protein kinase 2	410	612	-	-
	Pral2906g00001	652	SUPERFAMILY	Protein kinase-like (PK-like)	316	604	IPR011009	-
	Pral2906g00001	652	Pfam	Protein tyrosine and serine/threonine kinase	337	604	IPR001245	GO:0004672\|GO:0006468
	Pral2906g00001	652	ProSiteProfiles	Gnk2-homologous domain profile.	33	138	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2906g00001	Pral-Chr2906	24231	28628	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2906g00001	1	652	Receptor kinase-like Gene Family	AT1G70520	36.527	7.53e-128	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral2906g00001		PK_Tyr_Ser-Thr	2.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2906g00001	-		-	gmx:100813585	831.632