Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2903g00005 ATGGCAGGTTTCAGCGGTGACGAAACTGCTCCATTCTTTGGCTTCCTTGGAGCTGCTGCTGCCCTTGTCTTCTCCTGTATGGGAGCCGCTTACGGAACAGCAAAGAGTGGAGTAGGCGTGGCCTCTATGGGAGTTATGAGGCCAGAGCTCGTCATGAAATCCATTGTCCCAGTGGTAATGGCTGGAGTGCTGGGTATTTATGGATTAATCATAGCTGTTATTATTAGTACAGGAATTAACCCGAAAGCAAAATCTTACTATCTCTTCGATGGGTATGCCCACTTATCGTCCGGCCTTGCCTGTGGCCTTGCCGGACTTTCTGCGGGAATGGCGATTGGAATTGTTGGTGATGCTGGAGTTCGGTATGTTTTATTTTTCTTTTCTTTTACAAGTATTTTCTTACTTTATCCTTTTCTTTTTCGGGCGAACGCCCAGCAACCAAGCGTGTTCGTGGGAATGATTCTTATTCTGATCTTTGCGGAAGCTCTGGGCCCTCTACGGCCTCATCGTGGTATCATTCTGTCATCTCGTGCAGGCCAATCCCGTGCTGATTGA 555 0.4793 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYVLFFFSFTSIFLLYPFLFRANAQQPSVFVGMILILIFAEALGPLRPHRGIILSSRAGQSRAD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2903g00005 184 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Pral2903g00005 184 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pral2903g00005 184 Pfam ATP synthase subunit C 96 123 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pral2903g00005 184 SUPERFAMILY F1F0 ATP synthase subunit C 86 164 IPR035921 -
Pral2903g00005 184 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 164 - -
Pral2903g00005 184 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Pral2903g00005 184 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Pral2903g00005 184 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Pral2903g00005 184 FunFam V-type proton ATPase proteolipid subunit 10 181 - -
Pral2903g00005 184 Gene3D - 10 181 IPR035921 -
Pral2903g00005 184 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral2903g00005 184 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pral2903g00005 184 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2903g00005 Pral-Chr2903 37480 39170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2903g00005 2 184 Primary Pumps ATPases(2) AT1G75630 81.218 5.48e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2903g00005 K02155 - gmx:100779290 260.381