Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral289g00052 ATGACGAATCAAACCTCCACTGAAACTACAAGTACCAGTAACTCTTCTCCTTCTGCTTCTCTTTCTTCTTCGTCTTCCTCATCTGAACTATCCAACCCCAGTTCAAATTCTCAGGCCCAGAAAGCTCAATCTCAGAGCAAGCAAGAAGAGAGCAGTACTAACAGAGCCAAGAGAGCCAGAGATCCTTCTGACAAGCATCCATCCTACCATGGGGTTCGAATGCGAAATTGGGGCAAATGGGTCTCTGAAATTCGGGAGCCTCGCAAGAAATCACGAATCTGGCTCGGCACTTTCGCTACTCCAGAAATGGCGGCTCGAGCACATGACGTCGCTGCTCTGAGCATCAAGGGAGAATCCGCCGTCCTCAACTTCCCTCATATAGCCTCTCTGCTGCCCAGACCCGTCACCTTCGCCCCGCGTGACATCCAAGCCGCCGCCGCGGAAGCAGCGGCCATGGTGAAATTCGACTCTGCTCAGCCTTCGTCTTCTCCTTCTTCGCCGGAAGAAGCAGAGTCCTCGGAGCTGAGTGAGATAGTGGAATTACCCAACATTAATGAAGAGAGCTTCGATTCGGTTGAGTCATCATCGACGAGTAGTCATGACTTTGTGTGGGTGGAATCCATGGATTGTTGGGTGTATGATCCTCCATTAATGGGGTTAGATGAACAAGGCTTCTTTGACCAGTTTTACGGAGAAGAAGGAGGCTTTGAGATATCAATCTGGGATTAA 729 0.5007 MTNQTSTETTSTSNSSPSASLSSSSSSSELSNPSSNSQAQKAQSQSKQEESSTNRAKRARDPSDKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGESAVLNFPHIASLLPRPVTFAPRDIQAAAAEAAAMVKFDSAQPSSSPSSPEEAESSELSEIVELPNINEESFDSVESSSTSSHDFVWVESMDCWVYDPPLMGLDEQGFFDQFYGEEGGFEISIWD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral289g00052 242 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Pral289g00052 242 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 MobiDBLite consensus disorder prediction 51 71 - -
Pral289g00052 242 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 MobiDBLite consensus disorder prediction 155 175 - -
Pral289g00052 242 MobiDBLite consensus disorder prediction 1 71 - -
Pral289g00052 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 190 - -
Pral289g00052 242 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Pral289g00052 242 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Pral289g00052 242 MobiDBLite consensus disorder prediction 156 172 - -
Pral289g00052 242 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Pral289g00052 242 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral289g00052 Pral-Chr289 353376 354286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral289g00052 28 216 AP2-EREBP Transcription Factor Family AT5G11590 52.683 3.75e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral289g00052 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral289g00052 K09286 - pcin:129289324 305.449