Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral289g00016 ATGGGCGTGGACATGTCCAATAACCCACCTCCATCTTCTCACACTAAAGACTTCTTCGCTTCTCCGGCTCTTTCTCTCAGTCTCGCTGGGATTTTCCGGCATGCTGGGGAAACGGCTGCGGTGGCGGGGGCCGCCACGTCCAGCAGAGAGGTGGAGGAGGGGGATGAAGGGAGTGGCGGGGGCCGACGAGATGAAACAGTGGAGATTAGCAGCGAGAACTCCGGCCACACGAGATCCAGATCGGACGATATTGATTTTGAAGGAGAAGGAGAGCATGACGACGATGACGGCGGCGACGGAGATAAGAACAAGAAGAAGAAAAGGAAGAAGTATCACAGACACACTGCTGAACAAATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCCCACCCTGATGAAAAGCAAAGGCAACAACTTAGCAAACAATTAGGCCTTGCTCCTCGACAAGTCAAGTTCTGGTTCCAGAATCGTCGAACCCAAATCAAGGCAATCCAAGAGCGTCATGAGAATTCATTGTTAAAGACAGAAATCGACAAACTGAGGGACGAAAACAAGCAAATGAGAGAGACCATCAACAAAGCTTGCTGCCCAAACTGTGGCATGGCCACCACCAGCAGAGACACCCTCATGTCCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTCAAAGCCGAGGTGGAGAAGTTAAGAGCGGTGATAGGGAAGTACCCACAAGGGACAGCGTCGCCGTCGTGTTCGGGAGGGAATGAACAAGAGTGCAGGAGCTCGTTGGATTTCTACACTGGTATATTTGGGCTTGACAAGTCCAGAATAATGGAGATTGTGAATCAAGCCGTGGAGGAGCTGGTGAAAATGGCGACCGTGGGAGAACCATTGTGGGTTCGGAGTTTAGAGACTGATCGGGAAATTCTGAACTATGATGAGTATGTGAAGGAGTTTGGGAACAACAAAGTTGAAAGTTCAAGCAGCCGTGGAGGAAGACCCAAAAGATCCATTGAAGCTTCCAGAGAAACTGGCCTTGTTTTTGTTGATCTCCCTCGTCTCGTTCACAGATTCTTAGATGTGAATCAATGGAAGGAAATGTTTCCATGCTTGATATCAAAAGCAGCAACTGTGGATGTGATATGCAGTGGAGAAGGAGCTAACAGAAACGGTGCCGTTCATCTGATGTTCGCTGAGCTACAAATGCTAACGCCAATGGTGGCCACAAGAGAAGTTTATTTCGTGAGGTACTGCAAGCAACTCAGTGCAGAGCAGTGGGCAATTGTGGATGTGTCAGTGGACAAGGTTGAAGACAACATAGATGCCTCACTTGTCAAATGTCGAAAAAGACCCTCTGGCTGCATTATTGAAGACAAGTCTAATGGCCATTGCAAGGTAACGTGGGTGGAGCACTTGGAATGCCAGAAGAGCGCAGTCCACACAATGTACCGCACCATTGTGAACAGTGGCATGGCTTTTGGTGCAAGGCACTGGGTTGCCACCCTCCAACTTCAATGTGAACGTCTGGTTTTCTTCATGGCCACCAATGTTCCCATGAAGGATTCAACTGGTGTTGCAACGTTAGCAGGAAGGAAGAGCATTTTGAAGCTAGCACAGAGAATGACATGTAGTTTCTGCCATGCCATTGGAGCTTCGAGCTTCCATACATGGACTAAGGTCACCAGCAAAACAGGGGAAGACATCAGAATAAGTTCTAGGAAGAATTTGAATGATCCTGGGGAACCTCTAGGGGTGATCTTATGTGCAGTTTCTTCTGTGTGGCTGCCAGTTTCTCCTAATGTTCTGTTCGATTTCTTGAGGGATGAAGCTCGCAGATCTGAGTGGGATATCATGTCCAATGGTGCCTCAGTGCAATCTATAGCGAACTTAGCCAAAGGACAAGATCGAGGCAATTCAGTGACCATCCAAACAATTAAATCTAAAGAAAACAGCATGTGGGTACTACAAGATAGCTGCACAAATGCATACGAATCAATGGTAGTTTATGCTCCAGTTGATATCACTGGGATTCAGTCTGTGATGACAGGATGTGACTCTAGCAATCTAGCCGTACTTCCCTCAGGCTTCTCAATTCTACCTGATGGGTTGGACGCTAGGCCATTGGTCATAACTTCGAGGGAGGAAGAGAGAAACACAGAAGGAGGATCTTTGCTCACAGTGGGTTTCCAGGCCCTTACTAATACATCTCCTACAGCTAAGCTAACAATGGAGTCTGTGGAATCTGTCAACACTCTTGTATCTTGTACATTAAGAAATATCAGAACCAGTTTACAATGTGAGGATGGTTGA 2301 0.4733 MGVDMSNNPPPSSHTKDFFASPALSLSLAGIFRHAGETAAVAGAATSSREVEEGDEGSGGGRRDETVEISSENSGHTRSRSDDIDFEGEGEHDDDDGGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIDKLRDENKQMRETINKACCPNCGMATTSRDTLMSTEEQQLRIENAKLKAEVEKLRAVIGKYPQGTASPSCSGGNEQECRSSLDFYTGIFGLDKSRIMEIVNQAVEELVKMATVGEPLWVRSLETDREILNYDEYVKEFGNNKVESSSSRGGRPKRSIEASRETGLVFVDLPRLVHRFLDVNQWKEMFPCLISKAATVDVICSGEGANRNGAVHLMFAELQMLTPMVATREVYFVRYCKQLSAEQWAIVDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSAVHTMYRTIVNSGMAFGARHWVATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTCSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEARRSEWDIMSNGASVQSIANLAKGQDRGNSVTIQTIKSKENSMWVLQDSCTNAYESMVVYAPVDITGIQSVMTGCDSSNLAVLPSGFSILPDGLDARPLVITSREEERNTEGGSLLTVGFQALTNTSPTAKLTMESVESVNTLVSCTLRNIRTSLQCEDG 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral289g00016 766 SMART HOX_1 107 169 IPR001356 GO:0003677
Pral289g00016 766 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Pral289g00016 766 CDD homeodomain 112 163 IPR001356 GO:0003677
Pral289g00016 766 FunFam Homeobox-leucine zipper protein GLABRA 2 276 504 - -
Pral289g00016 766 SUPERFAMILY Bet v1-like 548 750 - -
Pral289g00016 766 CDD START_ArGLABRA2_like 271 504 - -
Pral289g00016 766 Gene3D - 97 177 - -
Pral289g00016 766 ProSiteProfiles START domain profile. 267 508 IPR002913 GO:0008289
Pral289g00016 766 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Pral289g00016 766 Pfam START domain 277 505 IPR002913 GO:0008289
Pral289g00016 766 SMART START_1 276 505 IPR002913 GO:0008289
Pral289g00016 766 Coils Coil 215 235 - -
Pral289g00016 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 761 IPR042160 -
Pral289g00016 766 MobiDBLite consensus disorder prediction 49 86 - -
Pral289g00016 766 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Pral289g00016 766 SUPERFAMILY Bet v1-like 269 505 - -
Pral289g00016 766 Gene3D - 277 501 IPR023393 -
Pral289g00016 766 Coils Coil 164 191 - -
Pral289g00016 766 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Pral289g00016 766 MobiDBLite consensus disorder prediction 39 116 - -
Pral289g00016 766 FunFam Homeobox-leucine zipper protein HDG1 92 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral289g00016 Pral-Chr289 126147 134004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral289g00016 69 765 Homeobox Transcription Factor Family AT1G79840 66.054 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral289g00016 START 1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral289g00016 K09338 - qsu:111988083 1234.55