Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2898g00001 ATGGAGCCATCAGGGTCAGAAACTGAAATGCAACATAAGGGAACCATCTGTTCTAAAGATGTTTTTGGTGGAACTCCTGAAGCTCTCGGGACTCCTGCTCAAGCAAAAGTGCTGCCTCAGAATGATAGGCAGCAGAGGATATCAGTTGCAGATGTGATGTGTTCAACATGCAAGCAACTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGCATCAAGAACTCAGCTGATGAGATGCTTATATGCCAAATTTGTCAACTTCCACATCCAAGGGGATTTCCAAGAGTTTGTTTGGAGCTTGATAACTTTATAAAGGAAGAATTTCCTGAGGAATATGCAAAGCAAAGAGATGCTGTTCAACTTAGGCATATCAACGATAAACCTGATACCCCTTCTTGTTCACTGAATAATGATGGCGGAGGAAGAGCAGCATTGTGGTCTGATCCTCACTCAAAAGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAAGATTGGTTTTGATCTTTGTGCGGACTGTTATAAAATTCGCAGCAAGATTCCGGGTCGGTTCAATCAGCAGCACACTCCAGATCACGAGTTTGAGCTTGAACAAATCAGCATTATCCATAACATAATGAGACTGGTTACTGGACAGTTAGGAGATGGTTCCATTGAAAACTTGCCTATGGAAAGCTTAGGATTTAGACCTGAAGATCCCAATTTGGTGGTTGATGCTGATGGAGAACATAACCAGAATGACTCTGGCGGCACCAATTGA 825 0.4218 MEPSGSETEMQHKGTICSKDVFGGTPEALGTPAQAKVLPQNDRQQRISVADVMCSTCKQLLFHPVVLNCGHVYCESCIKNSADEMLICQICQLPHPRGFPRVCLELDNFIKEEFPEEYAKQRDAVQLRHINDKPDTPSCSLNNDGGGRAALWSDPHSKVHVGVGCDFCGMFPIVGDRYRCKDCKEKIGFDLCADCYKIRSKIPGRFNQQHTPDHEFELEQISIIHNIMRLVTGQLGDGSIENLPMESLGFRPEDPNLVVDADGEHNQNDSGGTN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2898g00001 274 SMART zz_5 159 205 IPR000433 GO:0008270
Pral2898g00001 274 SUPERFAMILY RING/U-box 154 217 - -
Pral2898g00001 274 ProSiteProfiles Zinc finger RING-type profile. 54 92 IPR001841 -
Pral2898g00001 274 Pfam RING-type zinc-finger 54 79 IPR027370 -
Pral2898g00001 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 137 IPR013083 -
Pral2898g00001 274 Gene3D - 153 219 IPR043145 -
Pral2898g00001 274 SMART ring_2 54 91 IPR001841 -
Pral2898g00001 274 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Pral2898g00001 274 PANTHER UNCHARACTERIZED 12 220 - -
Pral2898g00001 274 MobiDBLite consensus disorder prediction 254 274 - -
Pral2898g00001 274 FunFam E3 ubiquitin-protein ligase PRT1 154 219 - -
Pral2898g00001 274 Pfam Zinc finger, ZZ type 160 198 IPR000433 GO:0008270
Pral2898g00001 274 ProSiteProfiles Zinc finger ZZ-type profile. 160 224 IPR000433 GO:0008270
Pral2898g00001 274 SUPERFAMILY RING/U-box 51 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2898g00001 Pral-Chr2898 5868 8976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2898g00001 51 179 C2H2 Transcription Factor Family AT5G39550 26.119 1.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2898g00001 - - gmx:100782681 337.035