Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2895g00002 ATGAAGGCTTTACCGAATGGCTACTTGCCTAATTCTGGCGAAGGGGAAAGAAAAACAATCAACTCAGAGTTATGGCATGCATGTGCTGGACCCTTGGTTTCCTTACCTCCTGTTGGAAGTCTCGTCGTTTATTTCCCTCAAGGACACAGTGAGCAAGTCGCAGCATCCATGCAAAAGGAGGCTGATTTCATACCCAGTTATCCTAACCTTCCGTCCAAGTTAATTTGCATGCTTCACAATGTTGCATTACATGCTGATCCAGAAACTGATGAGGTCTATGCACAAATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTTGCATCAGACATGGGTCTGAAGCAAAGCCGACAGCCTGCTGAATTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGTACGCATGGTGGATTTTCTGTACCTCGTAGAGCAGCAGAGAAAATATTTCCACCTCTGGATTTTTCAATGCAACCTCCTGCTCAGGAGATTGTTGCCAAGGATTTGCATGACAATACATGGACATTCAGACATATTTATCGCGGACAACCAAAGAGGCATCTGCTGACTACTGGTTGGAGTGTCTTTGTCAGCACAAAAAGACTATTCGCTGGAGATTCTGTTCTTTTTATTAGGGATGCAAAACAGCAGCTTCTTGTGGGTACAAGGCATGCCAATAGACAACAACCTGCTCTCTCTTCATCGGTCATATCCAGTGACAGCATGCATATAGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAACAGCCCATTTACCATATTTTACAATCCAAGAGCTAGCCCTGCAGAATTTGTAATTCCAATGGCCAAGTATAATAAAGCCATGTACACCCAAGTTTCCCTTGGAATGAGGTTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTTCGTCGATACATGGGTACAATTACAGGGATCAGTGACTTGGATCCTGTGCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTATCAATTTGGGACATTGAACCAGTCGTTACTCCTTTCTACATTTGCCCCCCTCCTTTCTTCAGGCCCAGGTTCTCCAAGCAACCAGGAATGCCAGATGATGACTTCGACATGGAAAATGCATTCAAGAGAGCTATGCCCTGGCTCGGCGATGACTTTGGCATGAAAGATGCCTCAAGTTCAATGTTTCCTGGTTTGAGTTTAGTTCAGTGGATGAGCATGCAGCAGAACAACCAGTTATCTGCTACACAATCAGGAATGTTCCCATCTATGCTTTCATCCAATTCCCTTCAGAATAACCTCAGCACTGATGATCCATCCAAATTATTGAGCTTTCAAAACCCTGTCCTCTCTGCATCAAATCTTCAATTTAACAGACCAAATTTACCAAACCAAGTCAACCAATTGCAACAAGCCCCAACATCATGGCCTCAGCAGCAGCAGCAGCAGCAGCAGATGCAATCCTTGTTGCAAGCACCTGACCAGCTCCAGCAGCAGAGGCAGCAGCCGCAGCCGCAGCTGCAGCCGCAGCCACACCAGCTTCCTGAGCCACAAAATATGACGCCGCAGCAGCAGCAGCAGCCACCACCCCAGTTGCAGCAACAGCGAGTACAACAACCACAGCAGCAGCAGCAATCATGTCAACAGGCCATTATAAACAATGTGATTGGTTCTAGCCAAATTCCAAATCCGAGTGTGCAACAATCAATAGCCTACTCTCAGCTTCAGCAGCAGCAGTTACTGTCAGCCAGCATGCCTCTTCAGCAAAATATTCAATCAGCTAGCAAAAATACATTCCCACTCACAACCTTATCACAAGATTCACAGTTTCAGCCACAGATAGACCCACAAGCTACTCTCTTGCAGAGGCAGCAGCAGCAGCAGCAACAATAATTGCAGATATTCCAACAGAGCTTGTCACAGAGGGCCCCACAACAACCCCAAGTGGCTCAGTTGCCACCACAAAACCTGTCAGAACAACAGTTGCACATACAGTTGCTACAAAAATTGCAGCAGCAGCAGCAATTTCTTTCTCCAGCTAGTTCACTTTTGCAGCCTCAGCTGCTACAGCAACAGCAAGCACATGTACCAAACCAACAACTACCACAGCCGACTCTGTCTCAGCATCAGCCTCAGCCTCAGCAGCTCAGCAACAATGCATTATCTGCAGAGAAGCTTCTGGTCAGCAACGGCTTTCTTCTTCACCTCTGA 2256 0.465 MKALPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDAKQQLLVGTRHANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPAEFVIPMAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPRFSKQPGMPDDDFDMENAFKRAMPWLGDDFGMKDASSSMFPGLSLVQWMSMQQNNQLSATQSGMFPSMLSSNSLQNNLSTDDPSKLLSFQNPVLSASNLQFNRPNLPNQVNQLQQAPTSWPQQQQQQQQMQSLLQAPVXQLQQQRQQPQPQLQPQPHQLPEPQNMTPQQQQQPPPQLQQQRVQQPQQQQQSCQQAIINNGXIGSSQIPNPSVQQSIAYSQLQQQQLLSASMPLQQNIQSASKNTFPLTTLSQDSQFQPQIDPQATLLQRQQQQQQQSXLQIFQQSLSQRAPQQPQVAQLPPQNLSEQQLHIQLLQKLQQQQQFLSPASSLLQPQLLQQQQAHVPNQQLPQPTLSQHQPQPQQLSNNALSAEKLLVSNGFLLHL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2895g00002 754 SMART B3_2 126 228 IPR003340 GO:0003677
Pral2895g00002 754 Gene3D - 289 360 - -
Pral2895g00002 754 FunFam Auxin response factor 124 228 - -
Pral2895g00002 754 Gene3D - 124 227 IPR015300 -
Pral2895g00002 754 MobiDBLite consensus disorder prediction 428 523 - -
Pral2895g00002 754 FunFam Auxin response factor 289 361 - -
Pral2895g00002 754 MobiDBLite consensus disorder prediction 616 640 - -
Pral2895g00002 754 MobiDBLite consensus disorder prediction 706 739 - -
Pral2895g00002 754 CDD B3_DNA 125 215 IPR003340 GO:0003677
Pral2895g00002 754 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Pral2895g00002 754 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral2895g00002 754 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pral2895g00002 754 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Pral2895g00002 754 MobiDBLite consensus disorder prediction 533 581 - -
Pral2895g00002 754 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 647 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral2895g00002 754 MobiDBLite consensus disorder prediction 428 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2895g00002 Pral-Chr2895 20529 27253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2895g00002 1 487 B3 DNA Binding Superfamily AT1G19220 82.752 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral2895g00002 B3 4.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2895g00002 K14486 - gmx:100815277 936.406