Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2895g00001 ATGAACTGTACTGAAGAATTAATTGATTTATTGGCAATAGCGTTGGTCCTTGTGCCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAATAGGTCAAAAGAGAAGGCCAGGTTGCGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGCCGCCTTTTAGATCACCTGAAGAATACATCATCATTCTTGTACACCAATTTGCGCTGGATAATCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGATGCAAAAACAGGTTGTGCTAACCAAGAGCATGCAGTTTCAAGGCACTCTGGAGCTCTAAGACAGAATTTGCTCTTATCAGCTACTTTAAACGAAAAAGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAGGGACAGAACCAATTTCGACAAAGGAGAGCCTTGATTCTTCAGAATCTGATGGGGAGAGTGAAGACAATGAAGAGAAGTATCCCAAAAACATGCTGCATACACCTGCCGGAGATTATAAAGTTCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGTGCACGTCTTGCTGTTCTTCTTTCAATTGTGAAGTACCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTCCACTTTTCACTGTTAAGGGAATTCCAGTTTTCTGCTCCACAATCAGAAGGAGATGCTAGACAGATGTTTCTGGGGTGTAAAGTGTTTCGTTTGCATGGGAACATGGATCAGGAGGACCGAAGGAATACTTTTCAGACGTTTAAAGCAGAGAAAGCAGCGCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGACTGGATTTTCCAAAAGTCAGATGCATTATACAATATGATTCTCCAGGGGAAGCCACTGAATATGTACATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGTGTATCACTGACGGACTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTATATGGTCAAAAGAAGCATACCAAGAATTTTGTTGCCATAGAGTCGCATCCCTGGGTCATTTGTCTTCAGAAGGCACTTGAATCTTTCATCATGTCTAAGCCCAAAATTGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACGCTGCCCATCGTGGTGATTTGAAAAGGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGCAAAGTCATACCAGAAGCAAGCTAAGAGGAAGAGGCTTCAGAAGCAAAGCGGGCTGGCTAAGAAGAGAAAGATCACCGGTGTGACATGA 1527 0.4139 MNCTEELIDLLAIALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLDAKTGCANQEHAVSRHSGALRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKGTEPISTKESLDSSESDGESEDNEEKYPKNMLHTPAGDYKVPTQLIQRYVKVPCGARLAVLLSIVKYLSEREASQKIVVFFSTCDAVDFHFSLLREFQFSAPQSEGDARQMFLGCKVFRLHGNMDQEDRRNTFQTFKAEKAALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTDYPLLKVLDSFPLYGQKKHTKNFVAIESHPWVICLQKALESFIMSKPKIDKLAKRGFCSWVRAYAAHRGDLKRIFMIKKLHLGHVAKSFALKQQPSLVAKSYQKQAKRKRLQKQSGLAKKRKITGVT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2895g00001 508 SMART DUF4217_3 415 480 IPR025313 -
Pral2895g00001 508 Pfam DEAD/DEAH box helicase 14 151 IPR011545 GO:0003676|GO:0005524
Pral2895g00001 508 CDD SF2_C_DEAD 213 362 - -
Pral2895g00001 508 SMART ultradead3 4 176 IPR014001 -
Pral2895g00001 508 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 92 100 IPR000629 -
Pral2895g00001 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 228 400 IPR001650 -
Pral2895g00001 508 Gene3D - 223 504 IPR027417 -
Pral2895g00001 508 Pfam Domain of unknown function (DUF4217) 417 477 IPR025313 -
Pral2895g00001 508 MobiDBLite consensus disorder prediction 170 202 - -
Pral2895g00001 508 Pfam Helicase conserved C-terminal domain 231 353 IPR001650 -
Pral2895g00001 508 SMART helicmild6 256 353 IPR001650 -
Pral2895g00001 508 Gene3D - 11 165 IPR027417 -
Pral2895g00001 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 374 IPR027417 -
Pral2895g00001 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Pral2895g00001 508 PANTHER RNA HELICASE 12 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2895g00001 Pral-Chr2895 439 4798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2895g00001 14 362 Eukaryotic Initiation Factors Gene Family AT5G11170 26.611 1.46e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2895g00001 K14806 - gmx:100805157 750.355