Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2894g00006 ATGCGGGGAGGATCGTCGGGTTCTTCTGCCGGTAATATCTTCGTTGATGAATTCTACTTCTCCGTTCTTTTTGATGAAGATGACATCTTTCCAATCTCCGATGAGAAATATGCAGAACAGATACAGCTGCAAGAGGCGCTGATGTCCTCAGTTATCATGTCCAGGACATTCAGATACGATGAGGATGAGATTAACGTTATTAATTCCGGAAAGGGGAAAATGAAGCTAGAGATTGGTGAATCTTCCGGAAGCTCCAGTATCATGAGCTTCTGTGGGATTTGCATGGAAGACAAAGCAATGGAAAACATGTTCAGAGACAACAAAAGCTGCGAACATGTTTTCTGTTCAGACTGCATGGCATCCTACGTGGCGTCGAAGCTTAAAGAGAACATATCATCAATGGTGAAATGCCCTGACCCAAAATGCAGAAGCATCATAGAGCCGCTCTTCTGTCGATTCATCATCCCAGATGAGTTATTCGAGAGGTGGGAAAATGCAGTGTGCGAGAACCTGATTCTTGGGTCCCAGAAATTTTACTGTCCCTTCAAGGACTGCTCGGCCATGTTGGTGGACGATGGGGACGAGGTGGTGACATCCTCGGAGTGTCCGAACTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGACGTGGCACGCTGGGATGGATTGCACAGAGTTTCAGAGCCAGAAAGCTGATCAGACACACAACGATGATCTTCTAAAGGAACTCGCCAAGAACAAGAGATGGAGGAGATGCCCTCGATGCAGATTTTTCGTGGAAAAGATTGATGGATGCTCTCATATTTCCTGCAGGTTTGTGCCTGTGTATATCAGTGTGGGAATCAGTTTTGTTATGGATGCGGATCTGATTGGAATCAGCATCATGGGTGCCGTTTTTAGGATTATGCTAGCACGTAACGTTGTGATTCCGCATGCCAAATATTTGACTTCGCCACAGTGGAAATCTTAG 969 0.4623 MRGGSSGSSAGNIFVDEFYFSVLFDEDDIFPISDEKYAEQIQLQEALMSSVIMSRTFRYDEDEINVINSGKGKMKLEIGESSGSSSIMSFCGICMEDKAMENMFRDNKSCEHVFCSDCMASYVASKLKENISSMVKCPDPKCRSIIEPLFCRFIIPDELFERWENAVCENLILGSQKFYCPFKDCSAMLVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCTEFQSQKADQTHNDDLLKELAKNKRWRRCPRCRFFVEKIDGCSHISCRFVPVYISVGISFVMDADLIGISIMGAVFRIMLARNVVIPHAKYLTSPQWKS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2894g00006 322 ProSiteProfiles Zinc finger RING-type profile. 91 141 IPR001841 -
Pral2894g00006 322 SUPERFAMILY RING/U-box 90 170 - -
Pral2894g00006 322 CDD BRcat_RBR_unk 174 226 - -
Pral2894g00006 322 SUPERFAMILY RING/U-box 171 228 - -
Pral2894g00006 322 ProSiteProfiles TRIAD supradomain profile. 87 315 IPR044066 -
Pral2894g00006 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 172 IPR013083 -
Pral2894g00006 322 SMART ibrneu5 161 223 IPR002867 GO:0008270
Pral2894g00006 322 Pfam IBR domain, a half RING-finger domain 162 223 IPR002867 GO:0008270
Pral2894g00006 322 FunFam RBR-type E3 ubiquitin transferase 86 174 - -
Pral2894g00006 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 74 270 IPR031127 GO:0004842|GO:0016567
Pral2894g00006 322 SUPERFAMILY RING/U-box 233 270 - -
Pral2894g00006 322 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
Pral2894g00006 322 Gene3D - 220 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2894g00006 Pral-Chr2894 51097 52145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2894g00006 91 270 C3H Transcription Factor Family AT2G31770 27.027 4.09e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2894g00006 K11975 - qsa:O6P43_018461 349.747