Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2894g00004 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCAGCTGCTGCTGCGGCGGCGGCCGGGAGGGGGAGGTCTCGCCGGCTCACCGCCGATTACCTGTGGCCAGATTTGAATAAGCTTGGGTCTGGTGGGAGGTTTTCCAAGCCACTGAAGTCTGAAGCTGTCATCGACTTGGACGATGATTTTGAAGCTGATTTCAGGGAATTCAAGGATGATTCCGATATTGATGTGGATGAAGAGGATGATGTCAAACCCTTTGCTTCCTCCGCCACTAAGCCCTCTAAGAAGCCCCTGTCCCGTGGATCTGCTACTGCGAAAGCTGATAAATCTGCTGGGCAAGCTGAGAAGTCTTTGAAAAGGAGGAGGAAGAACCAATACAGGGGAATCCGCCAGCGTCCATGGGGTAAGTGGGCAGCTGAGATCCGTGACCCAAGGAAGGGTGTTCGTGTCTGGCTCGGAACGTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCCGAGGCAAGAAGGATCCGCGGCAAGAAAGCAAAGGTCAACTTCCCTGATGAGGTCTCAGGCACTTCATCAAAGCGTCTCAAGACTAAAGTCGAGAAGCCTCTTCCAAAGACCAATCTGAACTCTGCTCAACCCAATTCAACCCAAAACTTCAACGCTGGAACCAATCTGGAGGACTATTACTACTCCATGGGGCTGATGGAACAGAAACCACAGATTAACCAGTATGCTGCTGCTGCTGCTGCTAACATGGGATCCCTCCCTGAGACTAACAATGGGGTCCCGTCGCTGTCATCATCTGATGATGTCACTGTCTATTTCAGTTCTGATCAGGCGAGCAACTCATTCGACTACTCTGATTTCGGATGGGGCGAACAGGCTCCAAAGACCCCAGAAATCTCATCCATGCTTTCTGGTGAATCTCAGTATCTGCAAGATGCCAACCAGAACAACAACAACAACAACATGCAATACTCAAACTCTGAGAATGTGGTACCTGCTGGAAATGGTTCTGGGAAGACCCTATCGGATGAACTCGCTGACATTGAAACCCAACTGAATTTCTTCCAGACACCTTATCTTGAAGGAAGCTGGGATGATGCTTCCCTGGGAGCCCTGCTCAGTGGAGACGCAACCCAGGATGGTGCTAACCCAATGAGCCTTTGGAGCTTTGATGACCTTCCTCCATCCATGATGGGGGGAGTTTACTGA 1209 0.5062 MCGGAIISDFIPAAAAAAAAGRGRSRRLTADYLWPDLNKLGSGGRFSKPLKSEAVIDLDDDFEADFREFKDDSDIDVDEEDDVKPFASSATKPSKKPLSRGSATAKADKSAGQAEKSLKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVSGTSSKRLKTKVEKPLPKTNLNSAQPNSTQNFNAGTNLEDYYYSMGLMEQKPQINQYAAAAAANMGSLPETNNGVPSLSSSDDVTVYFSSDQASNSFDYSDFGWGEQAPKTPEISSMLSGESQYLQDANQNNNNNNMQYSNSENVVPAGNGSGKTLSDELADIETQLNFFQTPYLEGSWDDASLGALLSGDATQDGANPMSLWSFDDLPPSMMGGVY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2894g00004 402 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 PANTHER DNA-BINDING DOMAIN 94 294 IPR044808 GO:0003700|GO:0009873
Pral2894g00004 402 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Pral2894g00004 402 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Pral2894g00004 402 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Pral2894g00004 402 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 CDD AP2 125 183 IPR001471 GO:0003700|GO:0006355
Pral2894g00004 402 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2894g00004 Pral-Chr2894 21968 24856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2894g00004 1 402 AP2-EREBP Transcription Factor Family AT1G53910 46.209 1.00e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2894g00004 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2894g00004 K09286 - cave:132186622 416.001