Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2890g00032 ATGGCTGTTCCAAAAGTGGACAGAAAGATGCTTGAAGAACTTGAAACAATGGGATTTCCAAAGGCAACGGCAACTCGAGCACTGCATTATTCTGGCAATACCAATGTAGAGGATGCTATAAATTGGATAGTTGATCATGAGAATGATCCTGACATTGATGAGATTCCGTTGGTGGACGTAGATATTGAGATTGGTTCTTCTCAATCATTCCCTATAACAGAAGAAATGGAAATCAAAGCACAGAAGCTAAGGAAGAATAGTTCTCCTCATTCGTTCCCTATCACAGAAGAATCGCAAATCAAAGGACAGAAGCTAAGTAGGGAACAACTGCACAAGATGAAAGAAGAGAAAGAAAAGAAATTGGAGATAGAAAGGGAAAAGGAGAGAATCGAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATTGCTGAAGAAAATGAAAGGCAACGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAGAGTCATGCGGAAACTAGAACAGGATAAGATAAACAGAAGGTCTACACTTGGGTTGCCCCTAGAAGGCCATCAAACCGTGAAATCTTCAGCTACAACAGTACAAAAAGAACAGAAACTGCAGAATCCAAGGCCTGTTTACACAGTTACAAAAGTTGAGCTCTTCAGAGAATGTTTGAGGTCCCTCAAGCTTAACCACCAGGATGAGCAAGCAAGAGTCAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAGGAAAAATACAGGAAGATCCGATTTAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTGATTGGAGGTGTGGAATTTCTTGAACTATGTGGGTTTGAGAGAACGGGTGACTTTTTGTATCTTCCCGAGGAAAAGGTGGACATAACACTACTAAATTCAGCTGGATCCGTGTTGAAGTCTGCTATCACAAATCCCTTCTTTGGACTTTTCAGTACTCGGACAGTGTCATAA 1011 0.4115 MAVPKVDRKMLEELETMGFPKATATRALHYSGNTNVEDAINWIVDHENDPDIDEIPLVDVDIEIGSSQSFPITEEMEIKAQKLRKNSSPHSFPITEESQIKGQKLSREQLHKMKEEKEKKLEIEREKERIEAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRARERVMRKLEQDKINRRSTLGLPLEGHQTVKSSATTVQKEQKLQNPRPVYTVTKVELFRECLRSLKLNHQDEQARVRRAFETLLIYVGNVVKNPNQEKYRKIRFSNPLFQDRVGSLIGGVEFLELCGFERTGDFLYLPEEKVDITLLNSAGSVLKSAITNPFFGLFSTRTVS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2890g00032 336 Coils Coil 143 179 - -
Pral2890g00032 336 SMART PGNneu 242 303 - -
Pral2890g00032 336 Pfam PUB domain 239 307 IPR018997 -
Pral2890g00032 336 SMART uba_6 7 45 IPR015940 -
Pral2890g00032 336 PANTHER F13M7.16 PROTEIN 1 329 - -
Pral2890g00032 336 Pfam UBA/TS-N domain 7 43 IPR015940 -
Pral2890g00032 336 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Pral2890g00032 336 MobiDBLite consensus disorder prediction 83 104 - -
Pral2890g00032 336 MobiDBLite consensus disorder prediction 85 100 - -
Pral2890g00032 336 Coils Coil 106 133 - -
Pral2890g00032 336 SUPERFAMILY PUG domain-like 214 326 IPR036339 -
Pral2890g00032 336 CDD UBA_PUB_plant 6 53 - -
Pral2890g00032 336 Gene3D - 217 321 - -
Pral2890g00032 336 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Pral2890g00032 336 Gene3D - 7 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2890g00032 Pral-Chr2890 179675 183149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2890g00032 1 330 C2H2 Transcription Factor Family AT1G04850 52.853 1.49e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2890g00032 - - gmx:100781260 405.216