Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2890g00020 ATGCCATTAGCGGATAGCCATCGAGACTCGCTAGCCGGATTAACCCTCGACGATGTGTTAGCCAACCGAGCCGCCGCGTCGAGCCATCAGCTTACAAATAACCGCCGAACCCTGCTTGACATCATTCGTGAAGACGAGTCCTCCAAAAAGGATCGCAAATCTTGGAAAGCCTTCAAAGACAAGCTTCGGCTCAAACGCGCCGGATCTGCTTGGACTTCCTCCATCCTTATCCCAGCTTCGGATATCCCTTTCCCTATCCGGAATAACAGAAACCTTGCCACACAGTTCCCCCGTCGTAGCTCCGTCCGAGTCCTTACATTCTCACCTGTGGACGTCACGACTCACTGCATGGCTGATCCCACCGAAGAAGCCATCAAGAGTTCCCACCTCGCTCCCATGATCACGCGCCAGAGATCCACTCGCCAGGTCGGGGATGCCGTTTTCGTCGACGATAAACTCAAGCCTCAGATGTCCCGCCCGAACTCCGCACGTCTGGTGGCGGCGGTGCGCGCGGATTCCATCCGGCGAGAGCGCGTGGTGACATTTCGTGATAGCATTGATAGCGATGACGATGAGGATGGAGATGGCCACCAGCCGAGGGAGGGGAGGCAGATGTCTGCTCGGGAAGCTGTGGCAGCTCAGGAAGCAGCGGAGGCGGCGGCAATGGCGGGGGAAGAGGATGAGGAAGATGAAGAGGAAGGATCATTCGGGGCTGGGGGAGGGGGGGTGACGATGTCGCTGATGGACTTGTTGGAGGAGACGGATCGGCAAATGGGGCTGGAAGGATCGACATACAGAATGGAAGACGACGACGATGACGATTTTGATGAGGATGAAGAAGACGACGAAGGAGGTGAGGAGCACGATTGCTGCGTGTGCATGGTGAAGCATAGAGGTCCGGCTTTTGAGCCGTGTGGGCACTCGTTTTGCAGAATGTGTTCGAGGGAGCTCACCGTGAGCAAAGGAAATTGTCCTCTCTGCAACAATTTCATCCTGGAGATTCTTGAGGTTTTCTGA 1017 0.5585 MPLADSHRDSLAGLTLDDVLANRAAASSHQLTNNRRTLLDIIREDESSKKDRKSWKAFKDKLRLKRAGSAWTSSILIPASDIPFPIRNNRNLATQFPRRSSVRVLTFSPVDVTTHCMADPTEEAIKSSHLAPMITRQRSTRQVGDAVFVDDKLKPQMSRPNSARLVAAVRADSIRRERVVTFRDSIDSDDDEDGDGHQPREGRQMSAREAVAAQEAAEAAAMAGEEDEEDEEEGSFGAGGGGVTMSLMDLLEETDRQMGLEGSTYRMEDDDDDDFDEDEEDDEGGEEHDCCVCMVKHRGPAFEPCGHSFCRMCSRELTVSKGNCPLCNNFILEILEVF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2890g00020 338 MobiDBLite consensus disorder prediction 182 244 - -
Pral2890g00020 338 MobiDBLite consensus disorder prediction 266 286 - -
Pral2890g00020 338 Pfam Zinc finger, C3HC4 type (RING finger) 287 331 - -
Pral2890g00020 338 MobiDBLite consensus disorder prediction 262 286 - -
Pral2890g00020 338 SUPERFAMILY RING/U-box 289 334 - -
Pral2890g00020 338 SMART ring_2 290 327 IPR001841 -
Pral2890g00020 338 CDD RING-HC 290 327 - -
Pral2890g00020 338 ProSiteProfiles Zinc finger RING-type profile. 290 328 IPR001841 -
Pral2890g00020 338 MobiDBLite consensus disorder prediction 221 235 - -
Pral2890g00020 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Pral2890g00020 338 PANTHER OS01G0917900 PROTEIN 7 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2890g00020 Pral-Chr2890 114568 116162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2890g00020 1 338 C3H Transcription Factor Family AT3G07120 40.513 4.99e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2890g00020 - - pcin:129287682 513.072